judithabk6 / clonesigLinks
☆18Updated 2 years ago
Alternatives and similar repositories for clonesig
Users that are interested in clonesig are comparing it to the libraries listed below
Sorting:
- Testing a neutral evolution model on cancer sequencing data☆10Updated 4 years ago
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated 7 months ago
- cDriver R package for finding candidate driver genes in cancers☆18Updated 7 years ago
- A framework to infer mutational signatures in cancer over time☆55Updated 6 years ago
- A Tidy Framework to Hack Gene Expression Signatures☆19Updated 3 months ago
- SelectiOn in PRotein ANnotated regiOns. Adapted dN/dS based method to detect selection in specific protein regions☆11Updated last year
- ☆22Updated last year
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- GCAP (Gene-level Circular Amplicon Prediction) firstly implements extrachromosomal DNA detection from whole-exome-sequencing (WES) data a…☆20Updated 7 months ago
- ☆16Updated 2 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆32Updated 3 years ago
- Inferring selection in cancer sequencing data using ABC and population based simulations☆11Updated 4 years ago
- ☆40Updated 7 years ago
- Tools for assessing clustering robustness☆25Updated last week
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆36Updated 3 years ago
- Contribution of systemic and somatic factors to clinical response and resistance in urothelial cancer: an exploratory multi-omic analysis☆23Updated 7 years ago
- Inferring gene co-expression networks from single cell gene expression data☆26Updated 3 years ago
- Explore the cancer relevance of your gene list☆51Updated 5 months ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆36Updated last week
- cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer☆18Updated 2 weeks ago
- Optimizing Cancer Mutation Signatures Jointly with Sampling Likelihood☆10Updated 2 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Phenome Exome Association and Correlation Of Key phenotypes☆27Updated 3 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated last year
- Easy Copy Number !☆21Updated 3 weeks ago
- ☆23Updated 3 years ago
- R package that allows easily performing a complete Hi-C data analysis through a Graphical User Interface☆16Updated 4 years ago
- Implementation of FACETS for Terra☆12Updated 2 years ago
- R package for extracting and visualizing mutational patterns in base substitution catalogues☆11Updated last year