GCAP (Gene-level Circular Amplicon Prediction) firstly implements extrachromosomal DNA detection from whole-exome-sequencing (WES) data and absolute copy number profiles. https://shixiangwang.r-universe.dev/gcap
☆21Aug 22, 2025Updated 7 months ago
Alternatives and similar repositories for gcap
Users that are interested in gcap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.☆31Sep 15, 2023Updated 2 years ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆65Jul 17, 2024Updated last year
- ☆18May 8, 2023Updated 2 years ago
- An R package to time somatic mutations☆67Dec 12, 2020Updated 5 years ago
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆12Dec 6, 2021Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- simpler single cell RNAseq data Visualization☆10Feb 28, 2025Updated last year
- CRCmapper: map core regulatory circuitry☆14Nov 23, 2020Updated 5 years ago
- 🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R htt…☆158Dec 25, 2025Updated 3 months ago
- ☆28Sep 20, 2023Updated 2 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆57Apr 29, 2025Updated 10 months ago
- HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NG…☆12Sep 18, 2024Updated last year
- ☆10Jan 21, 2023Updated 3 years ago
- A variable-selection oriented LASSO bagging algorithm for biomarker development in omic-based translational research☆19Jul 7, 2023Updated 2 years ago
- a simple R data package for curated cancer pathway-specific gene lists☆13Mar 31, 2020Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 5 years ago
- StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high…☆13Mar 7, 2024Updated 2 years ago
- ☆10Mar 11, 2025Updated last year
- The Functional Analysis through Hidden Markov Models Software and Server☆14Nov 6, 2014Updated 11 years ago
- Model-based tumour subclonal deconvolution using population genetics☆35Dec 2, 2025Updated 3 months ago
- a tool to detect eccDNA using Illumina and ONT sequencing☆16Apr 20, 2024Updated last year
- Spatial Computational Inference of MEtastatic Timing (SCIMET)☆14May 28, 2019Updated 6 years ago
- Slides for my RLadies NYC Presentation☆11Feb 27, 2020Updated 6 years ago
- The R/Python scripts for the analysis of single-cell RNA-seq data from COVID-19 patients☆10Dec 16, 2020Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Somatic copy variant caller (CNV) for next generation sequencing☆75Sep 12, 2024Updated last year
- Execute command line tool from R☆20Mar 17, 2026Updated last week
- Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data☆18Apr 15, 2025Updated 11 months ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Apr 16, 2021Updated 4 years ago
- Computational identification of targets for CAR-T cell therapy in AML☆21Dec 25, 2022Updated 3 years ago
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆162Nov 4, 2025Updated 4 months ago
- ☆12Nov 6, 2023Updated 2 years ago
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆100Oct 4, 2024Updated last year
- ☆55Aug 1, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆33Sep 16, 2021Updated 4 years ago
- R package to do enrichment analysis for neoantigens☆13Feb 21, 2022Updated 4 years ago
- An Interactive Consensus Clustering framework for Cross-platform data analysis☆14Jan 28, 2022Updated 4 years ago
- ☆11May 12, 2021Updated 4 years ago
- Classify output of AmpliconArchitect to detect types of focal amplifications present☆21Mar 19, 2026Updated last week
- ☆14Mar 28, 2025Updated 11 months ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆30Aug 30, 2019Updated 6 years ago