OncoHarmony-Network / circrna-pipelineLinks
Cancer circRNA identification pipeline with an ensemble approach
☆17Updated last year
Alternatives and similar repositories for circrna-pipeline
Users that are interested in circrna-pipeline are comparing it to the libraries listed below
Sorting:
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆33Updated 4 years ago
- This repository contained single-cell RNA-seq datasets with ICB treated patients☆13Updated last year
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 6 years ago
- R package wrapping bedtools☆44Updated 8 months ago
- Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and …☆13Updated 4 months ago
- GCAP (Gene-level Circular Amplicon Prediction) firstly implements extrachromosomal DNA detection from whole-exome-sequencing (WES) data a…☆20Updated 3 months ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 4 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 7 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 3 years ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Updated 3 years ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆39Updated 8 months ago
- ☆29Updated 2 years ago
- Identify and correct invalid gene symbols☆60Updated last year
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- Openbiox 翻译小组发起并维护的优秀 Workflow 翻译项目☆27Updated 5 years ago
- ☆41Updated 7 years ago
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- Course Materials for Genomics Data Mining☆22Updated 2 months ago
- A General Framework for Consensus Partitioning☆63Updated 10 months ago
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆12Updated 4 years ago
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆35Updated 6 months ago
- Model-based tumour subclonal deconvolution using population genetics☆33Updated last week
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- ☆18Updated 2 years ago
- An R package to analyze single-cell V(D)J data☆28Updated 2 years ago
- 🧠 Visualizing Single Cell and Spatial Transcriptomics☆50Updated last month
- workshop website on readthedocs☆21Updated 2 months ago
- R vignettes for processing BUS format single-cell RNA-seq files☆21Updated 5 years ago
- ☆11Updated 7 months ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆24Updated 2 months ago