Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and non-clustered groups on a sample-dependent basis.
☆14Jun 18, 2026Updated last month
Alternatives and similar repositories for SigProfilerClusters
Users that are interested in SigProfilerClusters are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SigProfilerSimulator allows realistic simulations of mutational patterns and mutational signatures in cancer genomes. The tool can be use…☆22Jul 1, 2026Updated last month
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆42Jul 24, 2026Updated 2 weeks ago
- DriverPower☆26Jan 18, 2025Updated last year
- ☆11Apr 25, 2024Updated 2 years ago
- Python function for TMB snake plots☆16Feb 12, 2026Updated 5 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆20Jul 6, 2026Updated last month
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆24Jul 8, 2026Updated last month
- ☆18Jan 30, 2023Updated 3 years ago
- ☆19Apr 16, 2026Updated 3 months ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆26Jul 17, 2026Updated 3 weeks ago
- SigProfilerPlotting provides a standard tool for displaying all types of mutational signatures as well as all types of mutational pattern…☆53Feb 8, 2026Updated 6 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25May 2, 2018Updated 8 years ago
- SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the n…☆188Aug 4, 2026Updated last week
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Jan 29, 2026Updated 6 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Feb 17, 2021Updated 5 years ago
- SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations o…☆123Jul 21, 2026Updated 3 weeks ago
- cDriver R package for finding candidate driver genes in cancers☆18Jan 18, 2018Updated 8 years ago
- Classify output of AmpliconArchitect to detect types of focal amplifications present☆23Jul 22, 2026Updated 2 weeks ago
- Slides for my RLadies NYC Presentation☆11Feb 27, 2020Updated 6 years ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆36Jan 28, 2022Updated 4 years ago
- Assignment of known mutational signatures to individual samples and individual somatic mutations☆80Jul 29, 2026Updated last week
- An R wrapper for running the SigProfilerPlotting framework☆10Jan 29, 2026Updated 6 months ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆16Mar 6, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆12May 12, 2025Updated last year
- Somatic copy variant caller (CNV) for next generation sequencing☆79Sep 12, 2024Updated last year
- Pan-cancer quantification of neoantigen-mediated immunoediting in cancer evolution☆14May 4, 2022Updated 4 years ago
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆12Jun 16, 2021Updated 5 years ago
- MuSiCa - Mutational Signatures in Cancer☆23Dec 23, 2023Updated 2 years ago
- ☆13Sep 24, 2025Updated 10 months ago
- PTa Analysis TOolkit☆19Jun 9, 2026Updated 2 months ago
- R package to do enrichment analysis for neoantigens☆13Feb 21, 2022Updated 4 years ago
- Interactive visualisation of CellphoneDB results☆13Jan 15, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆14Nov 12, 2019Updated 6 years ago
- The EnsembleVariantCallingPipeline takes files in FASTQ or BAM format and performs SNV and INDEL variant calling from 4 variant callers (…☆15Jul 24, 2025Updated last year
- ☆13Oct 7, 2019Updated 6 years ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆15Jan 27, 2023Updated 3 years ago
- Trim adapters from MGI sequence data☆14Jun 11, 2023Updated 3 years ago
- A tissue-specific single-cell biological age model☆14Jul 26, 2023Updated 3 years ago
- Quantifying copy number signatures from absolute copy number profiles☆29Jul 23, 2025Updated last year