Alternatives and similar repositories for sanefalcon

Users that are interested in sanefalcon are comparing it to the libraries listed below

• babelomics / SMAca
  SMN1 copy-number and sequence variant analysis from next generation sequencing data
  ☆23Updated 2 months ago
• findingdan / UPDio
  ☆14Updated 2 years ago
• VUmcCGP / wisecondor
  WISECONDOR (WIthin-SamplE COpy Number aberration DetectOR): Detect fetal trisomies and smaller CNV's in a maternal plasma sample using wh…
  ☆47Updated last year
• Illumina / Gauchian
  A variant caller for the GBA gene using WGS data
  ☆23Updated last year
• ctsa / svtools
  Tools for processing and analyzing structural variants.
  ☆34Updated 10 years ago
• rdemolgen / SavvySuite
  Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes
  ☆31Updated 5 months ago
• Clinical-Genomics / stranger
  Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat
  ☆38Updated last month
• TheJacksonLaboratory / SVE
  ☆51Updated 6 years ago
• Genotek / ClassifyCNV
  ClassifyCNV: a tool for clinical annotation of copy-number variants
  ☆70Updated 2 years ago
• ikalatskaya / ISOWN
  ☆46Updated 6 years ago
• fakedrtom / SVAFotate
  ☆44Updated last year
• zeeev / mergeSVcallers
  heuristics to merge structural variant calls in VCF format.
  ☆38Updated 9 years ago
• rbundschuh / SMaSH
  A tool for sample swap identification in high throughput sequencing studies
  ☆10Updated 10 months ago
• ShujiaHuang / basevar
  This is the official development repository for BaseVar, which call variants for large-scale ultra low-pass (<1.0x) WGS data, especially …
  ☆27Updated 6 months ago
• liusihan / seGMM
  A new tool to infer sex from massively parallel sequencing data.
  ☆17Updated 8 months ago
• RahmanTeam / CAVA
  CAVA (Clinical Annotation of VAriants)
  ☆14Updated 7 years ago
• dooguypapua / eKLIPse
  a tool for predicting mitochondrial DNA deletions using soft-clipping
  ☆23Updated 3 years ago
• PubuduSaneth / cnvScan
  CNV screening and annotation tool
  ☆25Updated 9 years ago
• niu-lab / msisensor-ct
  Microsatellite instability (MSI) detection for cfDNA samples.
  ☆20Updated 4 years ago
• molgenis / CoNVaDING
  Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…
  ☆21Updated 5 years ago
• CenterForMedicalGeneticsGhent / PREFACE
  PREFACE -- PREdict FetAl ComponEnt
  ☆15Updated 3 weeks ago
• jzook / genome-data-integration
  Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls
  ☆45Updated 4 years ago
• DecodeGenetics / svimmer
  Structural variant merging tool
  ☆57Updated last year
• mulinlab / VarNote
  Fast and scalable variant annotation tool
  ☆30Updated 3 years ago
• fredsanto / coverageMaster
  ☆12Updated last year
• nspies / svviz2
  for visual evaluation of read support for structural variation
  ☆55Updated last year
• fritzsedlazeck / parliament2
  Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
  ☆48Updated 5 years ago
• vpc-ccg / svict
  Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA
  ☆29Updated last year
• KCCG / ClinSV
  Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data
  ☆75Updated last year
• YingZhou001 / Immuannot
  Immuological gene typing and annotation for genome assembly
  ☆38Updated 10 months ago