Single cell RNA Seq data analysis with quantitative phenotypes
☆13Nov 17, 2020Updated 5 years ago
Alternatives and similar repositories for singlet
Users that are interested in singlet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆14Jun 5, 2019Updated 6 years ago
- Single Cell RNA-seq UMI Filtering Facilitator☆11Oct 6, 2025Updated 6 months ago
- Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:☆24Jun 8, 2021Updated 4 years ago
- An R implementation of the SINCERA pipeline for single cell RNA-seq profiling analysis☆29Jan 27, 2021Updated 5 years ago
- Single-cell exploratory data analysis for RNA-Seq☆40Apr 24, 2021Updated 5 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Nov 8, 2018Updated 7 years ago
- GEO RNA-seq Experiments Processing Pipeline☆22Oct 25, 2019Updated 6 years ago
- Code used for the single-cell RNA-Seq batch effects paper☆11Sep 25, 2017Updated 8 years ago
- ☆12Jul 6, 2023Updated 2 years ago
- Scripts for using scanpy☆39Oct 20, 2025Updated 6 months ago
- SuperCell for Cytometry data☆13Oct 14, 2025Updated 6 months ago
- Predict cell cycle phase in a continuum from single-cell RNA-seq data☆14Nov 14, 2020Updated 5 years ago
- Run Jupyter on Orchestra 2☆12Jan 18, 2023Updated 3 years ago
- ☆22Nov 11, 2019Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Reproducible reanalysis of a combined ChIP-Seq & RNA-Seq data set☆17Aug 9, 2019Updated 6 years ago
- R package - Analysis of Single Cell Expression, Normalisation and Differential expression (ascend)☆22Aug 28, 2019Updated 6 years ago
- Overview of the machine learning project and various sub-tasks.☆10Updated this week
- IJCAI 2022- Escaping Feature Twist: A Variational Graph Auto-Encoder for Node Clustering☆20Apr 24, 2023Updated 3 years ago
- SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data☆19Mar 27, 2021Updated 5 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆48Jul 20, 2022Updated 3 years ago
- Dimensionality reduction for single cell RNA-seq data☆36Feb 9, 2020Updated 6 years ago
- SCOUP is a probabilistic model to analyze single-cell expression data during differentiation☆10Apr 20, 2017Updated 9 years ago
- R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …☆17Jul 15, 2015Updated 10 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- SCODE : an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation☆48Dec 12, 2019Updated 6 years ago
- kallisto index tag extractor☆20Jul 6, 2019Updated 6 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Jul 5, 2019Updated 6 years ago
- ☆10Sep 11, 2025Updated 7 months ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆30Oct 15, 2020Updated 5 years ago
- Rna-seq pipeline, From FASTQ to differential expression analysis...☆20Mar 13, 2017Updated 9 years ago
- scGMAI: a Gaussian mixture model for clustering single-cell RNA-seq data based on deep autoencoder☆15Jun 7, 2021Updated 4 years ago
- ☆17Sep 20, 2020Updated 5 years ago
- During outbreaks of emerging diseases such as COVID-19, efficiently collecting, sharing, and integrating data is critical to scientific r…☆35Apr 27, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆61Aug 30, 2022Updated 3 years ago
- run-length BWT tools for genomic sequences☆19May 19, 2022Updated 3 years ago
- Super fast Git tree filtering.☆17Apr 1, 2024Updated 2 years ago
- A mass spectrometry package for Julia☆11Updated this week
- Detection of structural variants in cancer mate-pair and paired-end data☆13May 3, 2019Updated 7 years ago
- Bioconductor package that makes BIG data pint-sized.☆21Feb 12, 2024Updated 2 years ago
- Quantitative Allele Specific Analysis of Reads. Joint genotyping & ASE inference for RNA-seq data☆28Feb 4, 2017Updated 9 years ago