mruffalo / sc-rna-seq-pipelineLinks
☆22Updated 5 years ago
Alternatives and similar repositories for sc-rna-seq-pipeline
Users that are interested in sc-rna-seq-pipeline are comparing it to the libraries listed below
Sorting:
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 5 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 6 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48Updated 5 years ago
- ☆12Updated 4 years ago
- Data and analysis for the Splatter paper☆29Updated 7 years ago
- Pathway-Level Information Extractor (PLIER): a generative model for gene expression data☆54Updated last year
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆105Updated 2 years ago
- Multi-omics studies are available here☆52Updated 3 years ago
- ☆12Updated 3 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆38Updated 3 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆13Updated 6 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- XEnograft Visualization & Analysis☆11Updated last month
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆23Updated 6 years ago
- ☆37Updated 2 months ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆28Updated last year
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- Single-cell Scalable Visualization and Analytics☆26Updated 6 years ago
- Clone of the Bioconductor repository for the scRNAseq package.☆29Updated 7 months ago
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆28Updated 2 years ago
- Fast motif matching in R☆46Updated last year
- Explore and share your scRNAseq clustering results☆50Updated 2 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆23Updated 6 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 6 years ago
- ☆28Updated 6 years ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆15Updated 4 years ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Updated 5 years ago