DarwinAwardWinner / CD4-csawLinks
Reproducible reanalysis of a combined ChIP-Seq & RNA-Seq data set
☆17Updated 6 years ago
Alternatives and similar repositories for CD4-csaw
Users that are interested in CD4-csaw are comparing it to the libraries listed below
Sorting:
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- ☆12Updated 3 weeks ago
- ☆13Updated 5 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 7 years ago
- R Interface to the NCBI SRA metadata☆23Updated 7 years ago
- A tool for Read Multi-Mapper Resolution☆24Updated 8 years ago
- A small R package to make sequencing read coverage plots in R.☆39Updated 2 weeks ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 7 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- ☆14Updated 2 months ago
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆17Updated 10 months ago
- fast webservices based query tool for large sets of genomic features☆25Updated 6 months ago
- Genomic plot in trellis layout☆41Updated last year
- Chromatin segmentation in R☆19Updated 7 years ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 3 years ago
- ☆10Updated 6 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 8 months ago
- Fast fusion detection using kallisto☆79Updated 5 months ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆30Updated last year
- Transcript quantification import with automatic metadata detection☆67Updated this week
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Updated last year
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Filter and prioritize fusion calls☆20Updated last year
- mitochondrial variant analysis tools☆15Updated 4 years ago
- Flexible Bayesian inference of mutational signatures☆37Updated 2 years ago
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Updated 9 years ago