maxplanck-ie / rna-seq-qcLinks
Rna-seq pipeline, From FASTQ to differential expression analysis...
☆20Updated 8 years ago
Alternatives and similar repositories for rna-seq-qc
Users that are interested in rna-seq-qc are comparing it to the libraries listed below
Sorting:
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- Script to automate differential expression analysis using DESeq2, edgeR or limma-voom☆18Updated 7 years ago
- Bioinformatics analysis scripts, workflows, general code examples☆53Updated 4 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 3 years ago
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆49Updated last year
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- R package for bcbio RNA-seq analysis.☆62Updated last year
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- RNA-Sequencing data differential expression analysis pipeline. Performs: genome coverage (via bedtools and HTSeq), generates Circos code …☆56Updated 12 years ago
- a set of NGS pipelines☆24Updated this week
- Linking GWAS studies to genes through cis-regulatory datasets☆39Updated 2 years ago
- A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays☆30Updated last year
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 7 years ago
- Tool for RNA-Seq analysis.☆39Updated 3 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- This repository contains course materials from JAX-BD2K workshop.☆32Updated 6 years ago
- Transcript quantification import with automatic metadata detection☆67Updated this week
- Mapped QC analysis program☆44Updated 7 years ago
- A small R package to make sequencing read coverage plots in R.☆39Updated 3 years ago
- This github repository contains code to reproduce the analysis in our paper "Variability in estimated gene expression among commonly used…☆28Updated last year
- Create regional association plots from GWAS or meta-analysis☆61Updated 5 years ago
- Genomic data interpretation and visualization Workshop☆21Updated last month
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.☆70Updated 4 years ago