Alternatives and similar repositories for lionessR

Users that are interested in lionessR are comparing it to the libraries listed below

• federicomarini / ideal
  Interactive Differential Expression AnaLysis - DE made accessible and reproducible
  ☆30Updated 4 months ago
• waldronlab / curatedTCGAData
  Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
  ☆43Updated 2 months ago
• waldronlab / SingleCellMultiModal
  Single Cell multimodal data scripts for downloading datasets
  ☆17Updated 3 months ago
• leekgroup / networks_correction
  Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"
  ☆16Updated 6 years ago
• csoneson / countsimQC
  countsimQC - Compare characteristic features of count data sets
  ☆29Updated 2 months ago
• igrabski / scRNAseq-cell-type
  Probabilistic gene expression barcodes for cell type annotation
  ☆25Updated 3 years ago
• nullranges / nullranges
  Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…
  ☆27Updated 5 months ago
• waldronlab / TCGAutils
  Toolbox package for organizing and working with TCGA data
  ☆28Updated 2 months ago
• mtmorgan / TENxGenomics
  Interface to 10x Genomics' 1.3 m single cell data set
  ☆18Updated 7 years ago
• myles-lewis / glmmSeq
  Gene-level general linear mixed model
  ☆22Updated 8 months ago
• andreaskapou / scMET
  Bayesian modelling of DNA methylation heterogeneity at single-cell resolution
  ☆23Updated last year
• Shians / CellBench
  R package for benchmarking single cell analysis methods
  ☆32Updated last year
• dcgerard / vicar
  Various Ideas for Confounder Adjustment in Regression
  ☆24Updated 2 years ago
• lgeistlinger / EnrichmentBrowser
  Seamless navigation through combined results of set-based and network-based enrichment analysis
  ☆21Updated last week
• StoreyLab / superSeq
  Assessing the increase in power from increasing read depth in a given RNA-Seq study
  ☆13Updated 6 years ago
• Bioconductor / BuildABiocWorkshop
  Template for building a bioconductor workshop package using github actions
  ☆21Updated 2 months ago
• vals / python-gprofiler
  ☆12Updated 6 years ago
• davemcg / awesome_genome_browsers
  ☆10Updated 6 years ago
• bwlewis / 1000_genomes_examples
  Examples using R and 1000 genomes data
  ☆28Updated 4 years ago
• caleblareau / immune_cell_signature_genes
  Repository for signature genes from Immune Cell Atlas
  ☆18Updated 5 years ago
• markziemann / mitch
  An R package for multi-dimensional pathway enrichment analysis
  ☆16Updated 5 months ago
• waldronlab / PublicDataResources
  Public data resources and Bioconductor: The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and using…
  ☆14Updated 4 months ago
• goncalves-lab / waddR
  R package for detecting differential distributions using a statistical test based on the wasserstein distance
  ☆27Updated 2 years ago
• lgatto / tidies
  A Grammar of Data Manipulation for Omics Data
  ☆21Updated 5 years ago
• dynverse / dynplot
  Visualising single-cell trajectories, including comparisons between two models 📈
  ☆31Updated 3 years ago
• mkanai / grimon
  R package for plotting 3D graphical visualization of multi-omics data.
  ☆23Updated 3 years ago
• stephaniehicks / methylCC
  R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms
  ☆18Updated 2 years ago
• kstreet13 / scry
  Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).
  ☆21Updated last year
• shazanfar / DCARS
  Differential Correlation across Ranked Samples
  ☆12Updated 2 years ago
• uc-bd2k / GREP2
  GEO RNA-seq Experiments Processing Pipeline
  ☆21Updated 5 years ago