Single-cell exploratory data analysis for RNA-Seq
☆41Apr 24, 2021Updated 5 years ago
Alternatives and similar repositories for scedar
Users that are interested in scedar are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single cell RNA Seq data analysis with quantitative phenotypes☆13Nov 17, 2020Updated 5 years ago
- Single Cell RNA Intron-Exon counting☆12May 7, 2020Updated 6 years ago
- Single-cell RNA-seq clustering and annotation☆13Oct 26, 2020Updated 6 years ago
- Data and analysis for the Splatter paper☆31Dec 4, 2017Updated 8 years ago
- Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:☆24Jun 8, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Fast visualization tool for large-scale and high dimensional single-cell data☆80Jun 23, 2026Updated 4 months ago
- ☆10Dec 14, 2016Updated 9 years ago
- Allen Brain Atlas utilities, parsers and data structures☆11Jun 25, 2017Updated 9 years ago
- Visualize cancer genomes with FAIR single-cell RNA-seq data☆13Jan 5, 2023Updated 3 years ago
- scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers☆22Sep 28, 2021Updated 5 years ago
- ☆44Oct 20, 2023Updated 3 years ago
- Bench-marking classification tools for scRNA-seq data☆195Jun 9, 2022Updated 4 years ago
- Consistent Clusters for scRNA-seq☆12Oct 6, 2021Updated 5 years ago
- ☆17Sep 20, 2020Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- resource for unix and SGE beginners☆24Feb 17, 2023Updated 3 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆39Nov 16, 2021Updated 4 years ago
- jinja2-enabled jupyter notebooks☆37Oct 16, 2026Updated 2 weeks ago
- Automated cell filtering for single-cell RNA sequencing data☆26Nov 14, 2023Updated 2 years ago
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆71Oct 8, 2026Updated 3 weeks ago
- The following repository contains code for all scRNAseq analysis and visualization performed in the paper: Single cell resolution analysi…☆18Oct 22, 2021Updated 5 years ago
- Comparison of dimensionality reduction methods☆30Mar 24, 2020Updated 6 years ago
- Modeling animal vocalizations with VAEs☆18Sep 8, 2021Updated 5 years ago
- Python framework for single-cell RNA-seq clustering with special focus on transfer learning.☆19Aug 29, 2019Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆11Updated this week
- SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data☆19Mar 27, 2021Updated 5 years ago
- Single cell RNA-seq preprocessing tool for gene-by-cell matrices of UMI counts. It is recommended to use the raw spliced and unpliced cou…☆20Sep 29, 2025Updated last year
- ☆14Aug 9, 2016Updated 10 years ago
- Dimensionality reduction for single cell RNA-seq data☆36Feb 9, 2020Updated 6 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆19Apr 2, 2020Updated 6 years ago
- scGMAI: a Gaussian mixture model for clustering single-cell RNA-seq data based on deep autoencoder☆15Jun 7, 2021Updated 5 years ago
- scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks☆10Aug 4, 2020Updated 6 years ago
- Deep Embedding for Single-cell Clustering☆89Apr 9, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆13Feb 27, 2024Updated 2 years ago
- ☆55Feb 19, 2025Updated last year
- ☆12Jul 6, 2023Updated 3 years ago
- A script for automating startup of a jupyter server on compute note - from you local machine.☆16Mar 6, 2024Updated 2 years ago
- ☆19May 5, 2021Updated 5 years ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆77Sep 22, 2025Updated last year
- ☆11Jul 6, 2021Updated 5 years ago