TaylorResearchLab / scedarLinks
Single-cell exploratory data analysis for RNA-Seq
☆40Updated 4 years ago
Alternatives and similar repositories for scedar
Users that are interested in scedar are comparing it to the libraries listed below
Sorting:
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆60Updated last year
- Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis☆46Updated 5 years ago
- Reproducing all analyses and figures for the ASAP-seq paper☆29Updated 4 years ago
- Multi-omics studies are available here☆52Updated 3 years ago
- Automated cell filtering for single-cell RNA sequencing data☆25Updated last year
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- Scanpy use cases.☆87Updated 5 years ago
- VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:☆34Updated 2 years ago
- Single-Cell Clustering Assessment Framework☆105Updated last year
- Data and analysis for the Splatter paper☆29Updated 7 years ago
- Fast visualization tool for large-scale and high dimensional single-cell data☆74Updated 2 years ago
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆65Updated last month
- data and model repository for single-cell data☆135Updated last year
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 6 years ago
- ☆43Updated 2 years ago
- Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…☆105Updated 6 months ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated 2 years ago
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆35Updated 3 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 2 years ago
- ☆69Updated 7 years ago
- ☆48Updated 7 years ago
- Pathway-Level Information Extractor (PLIER): a generative model for gene expression data☆55Updated last year
- Tutorials, workflows, and convenience scripts for Single Cell Portal☆50Updated last year
- Analyzing cellular niches in spatial transcriptomics data☆31Updated 11 months ago
- Rails/Docker application for the Broad Institute's single cell RNA-seq data portal☆68Updated this week
- Molecular interactions inference from single-cell multi-omics data☆27Updated last month