Kyoko-wtnb / FUMA_scRNA_dataLinks
Descriptions/scripts for pre-process and processed data for FUMA cell specificity analyses (scRNA-seq)
☆24Updated 5 years ago
Alternatives and similar repositories for FUMA_scRNA_data
Users that are interested in FUMA_scRNA_data are comparing it to the libraries listed below
Sorting:
- Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1☆18Updated 5 years ago
- Regional association plots☆24Updated last year
- ☆38Updated 4 years ago
- ☆20Updated 5 months ago
- ☆24Updated 4 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- ☆35Updated 2 years ago
- Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.☆31Updated this week
- Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.☆42Updated 2 years ago
- Code supporting analyses in paper on fine-mapping AD loci☆16Updated 4 years ago
- A tool for removing doublets from single-cell RNA-seq data☆76Updated 5 years ago
- Colocalization analysis of genetic association signals☆53Updated 7 months ago
- Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types☆38Updated 4 years ago
- S-LDSC scripts for use on MR server.☆10Updated 4 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆47Updated last year
- Mediated Expression Score Regression (MESC)☆27Updated 2 months ago
- ☆56Updated 5 years ago
- Assessing enrichment of complex disease or trait associations among QTLs☆15Updated 5 years ago
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆60Updated 2 months ago
- ☆43Updated 5 years ago
- R package for robust clustering of single cell RNA sequencing data☆36Updated last year
- ☆51Updated last month
- This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…☆53Updated 5 months ago
- Clone of the Bioconductor repository for the batchelor package.☆18Updated 10 months ago
- An R package for creating mirrored Manhattan plots☆18Updated 3 years ago
- R package containing the Cerebro application.☆40Updated 4 years ago
- R package for robust clustering of single cell RNA sequencing data☆39Updated 2 years ago
- ☆15Updated last year
- ☆19Updated 4 years ago
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆35Updated 7 months ago