Alternatives and similar repositories for FUMA_scRNA_data

Users that are interested in FUMA_scRNA_data are comparing it to the libraries listed below

• jbryois / scRNA_disease
  Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1
  ☆18Updated 5 years ago
• single-cell-genetics / limix_qtl
  ☆20Updated last month
• clagiamba / moloc
  ☆36Updated 4 years ago
• hakyimlab / gtex-gwas-analysis
  ☆23Updated 4 years ago
• jrs95 / gassocplot2
  Regional association plots
  ☆25Updated last year
• caleblareau / gchromVAR
  Cell type specific enrichments using finemapped variants and quantitative epigenetic data
  ☆45Updated 2 years ago
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆54Updated 3 months ago
• StatFunGen / pecotmr
  Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆28Updated 2 weeks ago
• Teichlab / innate_evo
  ☆10Updated 7 years ago
• Jeremy37 / AD_finemap
  Code supporting analyses in paper on fine-mapping AD loci
  ☆16Updated 4 years ago
• powellgenomicslab / onek1k_phase1
  Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types
  ☆35Updated 3 years ago
• neuhausi / single-cell-viewer
  R package to visualize scRNA sequencing data.
  ☆20Updated 3 years ago
• weizhou0 / SAIGEQTL
  ☆29Updated last month
• tgen / banovichlab
  Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).
  ☆46Updated last year
• asabjorklund / ILC_scRNAseq
  Analysis of single cell RNA-seq data from innate lympoid cells
  ☆15Updated 8 years ago
• cozygene / TCA
  ☆18Updated 4 years ago
• RHReynolds / LDSCforRyten
  S-LDSC scripts for use on MR server.
  ☆10Updated 3 years ago
• thewonlab / H-MAGMA
  ☆35Updated 2 years ago
• LTLA / batchelor
  Clone of the Bioconductor repository for the batchelor package.
  ☆17Updated 6 months ago
• MRC-Epid / pGWAS_discovery
  Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"
  ☆25Updated 4 years ago
• sb452 / mr-code
  Code for implementing Mendelian randomization investigations
  ☆18Updated 9 years ago
• douglasyao / mesc
  Mediated Expression Score Regression (MESC)
  ☆26Updated 3 years ago
• oganm / homologene
  An r package that works as a wrapper to homologene
  ☆46Updated last year
• GIS-SP-Group / RCA
  R package for robust clustering of single cell RNA sequencing data
  ☆40Updated 2 years ago
• PeeperLab / Rtoolbox
  Toolbox with R scripts
  ☆38Updated 6 years ago
• dcalderon / rolypoly
  Method for identifying trait-relevant gene annotations from GWAS summary statistics.
  ☆18Updated 3 years ago
• cole-trapnell-lab / monocle2-rge-paper
  Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)
  ☆29Updated 5 years ago
• eQTL-Catalogue / eQTL-Catalogue-resources
  ☆48Updated 3 months ago
• elimereu / matchSCore2
  ☆55Updated 4 years ago
• hbliu / Kidney_Epi_Pri
  Kidney Epigenome and Transcriptome-based multi-stage Prioritization
  ☆17Updated 2 years ago