Alternatives and similar repositories for sva-devel

Users that are interested in sva-devel are comparing it to the libraries listed below

• kauralasoo / wiggleplotr
  A small R package to make sequencing read coverage plots in R.
  ☆39Updated 3 years ago
• thelovelab / fishpond
  Differential expression and allelic analysis, nonparametric statistics
  ☆29Updated 8 months ago
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆29Updated last year
• nuno-agostinho / psichomics
  Interactive R package to quantify, analyse and visualise alternative splicing
  ☆37Updated this week
• CompEpigen / methrix
  An R for fast and flexible DNA methylation analysis
  ☆33Updated 2 months ago
• SimoneTiberi / BANDITS
  BANDITS: Bayesian ANalysis of DIfferenTial Splicing
  ☆18Updated last year
• lpantano / DEGreport
  Create a cromphensive report of DEG list coming from any analysis of RNAseq data
  ☆26Updated last year
• kgori / sigfit
  Flexible Bayesian inference of mutational signatures
  ☆36Updated 2 years ago
• pachterlab / aggregationDE
  Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter
  ☆19Updated 7 years ago
• bartongroup / RATS
  Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.
  ☆34Updated 3 years ago
• Bioconductor / BiocWorkshops2019
  The official repository of the Bioconductor 2019 Conference Workshops
  ☆24Updated 2 years ago
• drisso / RUVSeq
  Clone of the Bioconductor repository for the RUVSeq package, see https://bioconductor.org/packages/devel/bioc/html/RUVSeq.html for the of…
  ☆14Updated 2 years ago
• mrcuizhe / interacCircos
  An R Package based on JavaScript libraries for Visualization of Interactive Circos Plot
  ☆28Updated 3 years ago
• BIMSBbioinfo / HOT-or-not-examining-the-basis-of-high-occupancy-target-regions
  HOT regions paper
  ☆11Updated 6 years ago
• BIMSBbioinfo / pigx_rnaseq
  Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline
  ☆20Updated 8 months ago
• MonashBioinformaticsPlatform / varistran
  R package providing Variance Stabilizing Transformations appropriate for RNA-Seq data
  ☆21Updated 3 months ago
• sa-lee / superintronic
  A tidy interface for coverage analysis
  ☆30Updated 5 years ago
• Kuanhao-Chao / RNASeqR
  📊 An R package of RNA-seq workflow
  ☆15Updated 3 years ago
• jokergoo / gtrellis
  Genomic plot in trellis layout
  ☆41Updated last year
• luciorq / isoformic
  Isoform-level functional RNA-Seq analysis 🧬
  ☆25Updated 3 months ago
• itsvenu / ALPS
  AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project
  ☆16Updated 2 years ago
• mani2012 / BatchQC
  Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.
  ☆35Updated 2 years ago
• Bioconductor / GenomicFeatures
  Query the gene models of a given organism/assembly
  ☆27Updated last month
• andrewparkermorgan / argyle
  An R package for import, QC and analysis of Illumina Infinium genotyping arrays
  ☆34Updated 7 years ago
• mritchielab / GlimmaV2
  interactive plots for differential expression analysis
  ☆34Updated 3 months ago
• PhanstielLab / bedtoolsr
  R package wrapping bedtools
  ☆43Updated 6 months ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 3 years ago
• ge11232002 / TFBSTools
  Software Package for Transcription Factor Binding Site (TFBS) Analysis
  ☆30Updated 6 months ago
• thelovelab / tximeta
  Transcript quantification import with automatic metadata detection
  ☆67Updated this week
• pfh / topconfects
  TOP results by CONfident efFECT Sizes.
  ☆14Updated 9 months ago