Alternatives and similar repositories for gtex-gwas-analysis:

Users that are interested in gtex-gwas-analysis are comparing it to the libraries listed below

• Kyoko-wtnb / FUMA_scRNA_data
  Descriptions/scripts for pre-process and processed data for FUMA cell specificity analyses (scRNA-seq)
  ☆23Updated 5 years ago
• douglasyao / mesc
  Mediated Expression Score Regression (MESC)
  ☆26Updated 2 years ago
• single-cell-genetics / limix_qtl
  ☆20Updated 9 months ago
• xqwen / torus
  QTL Discovery using Annotations
  ☆24Updated 2 years ago
• powellgenomicslab / onek1k_phase1
  Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types
  ☆28Updated 3 years ago
• RitchieLab / GWAS-QC
  Quality control steps for GWAS
  ☆21Updated last year
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆51Updated 4 months ago
• thewonlab / H-MAGMA
  ☆32Updated last year
• jinghuazhao / TWAS-pipeline
  TWAS-pipeline
  ☆22Updated 4 years ago
• Teichlab / innate_evo
  ☆10Updated 6 years ago
• jxzb1988 / MMQTL
  MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…
  ☆11Updated last week
• xihaoli / MetaSTAAR
  An R package for performing MetaSTAAR procedure in whole-genome sequencing studies
  ☆23Updated 5 months ago
• GreenleafLab / NucleoATACR
  R package for reading in & working with NucleoATAC outputs
  ☆26Updated 6 years ago
• jbryois / scRNA_disease
  Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1
  ☆18Updated 4 years ago
• anastasia-lucas / hudson
  An R package for creating mirrored Manhattan plots
  ☆18Updated 2 years ago
• Marijn-Schipper / FLAMES
  FLAMES: Accurate gene prioritization in GWAS loci
  ☆31Updated last month
• bhattacharya-a-bt / isotwas
  ☆21Updated 3 months ago
• caleblareau / gchromVAR
  Cell type specific enrichments using finemapped variants and quantitative epigenetic data
  ☆43Updated last year
• jrs95 / gassocplot2
  Regional association plots
  ☆25Updated last year
• immunogenomics / IMPACT
  Code for creating cell-type-specific regulatory element annotation files
  ☆18Updated 10 months ago
• Jeremy37 / AD_finemap
  Code supporting analyses in paper on fine-mapping AD loci
  ☆15Updated 3 years ago
• gusevlab / stratAS
  🌓 Allele specific analyses across cell states and conditions
  ☆10Updated 2 years ago
• eQTL-Catalogue / eQTL-Catalogue-resources
  ☆46Updated 5 months ago
• weizhou0 / qtl
  ☆25Updated last month
• yuchaojiang / SCALE
  Allele-Specific Expression by Single-Cell RNA Sequencing
  ☆28Updated 4 years ago
• dcalderon / rolypoly
  Method for identifying trait-relevant gene annotations from GWAS summary statistics.
  ☆17Updated 2 years ago
• yiminghu / post-GWAS-pipeline
  A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data
  ☆28Updated 2 years ago
• xqwen / dap
  software package for integrative genetic association analysis
  ☆34Updated last year
• KafsackLab / scRNAseq-Malaria
  Codes associated with the Poran, Nötzel et al. paper titled "Single-cell RNA-seq reveals a signature of sexual commitment in malaria para…
  ☆10Updated 7 years ago
• hall-lab / gtex
  GTEx analysis scripts
  ☆20Updated 8 years ago