Alternatives and similar repositories for gtex-gwas-analysis

Users that are interested in gtex-gwas-analysis are comparing it to the libraries listed below

• Jeremy37 / AD_finemap
  Code supporting analyses in paper on fine-mapping AD loci
  ☆16Updated 4 years ago
• douglasyao / mesc
  Mediated Expression Score Regression (MESC)
  ☆27Updated last month
• Kyoko-wtnb / FUMA_scRNA_data
  Descriptions/scripts for pre-process and processed data for FUMA cell specificity analyses (scRNA-seq)
  ☆24Updated 5 years ago
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆35Updated 5 years ago
• single-cell-genetics / limix_qtl
  ☆20Updated 5 months ago
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆53Updated 6 months ago
• eQTL-Catalogue / eQTL-Catalogue-resources
  ☆50Updated last week
• clagiamba / moloc
  ☆37Updated 4 years ago
• saralpulit / gwas-scripts
  A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…
  ☆20Updated 8 years ago
• jinghuazhao / TWAS-pipeline
  TWAS-pipeline
  ☆24Updated 4 years ago
• StatFunGen / pecotmr
  Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆31Updated 3 weeks ago
• bhattacharya-a-bt / isotwas
  ☆23Updated 5 months ago
• wuyangf7 / OPERA
  This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…
  ☆36Updated last year
• Xinglab / GTEx-brain-sQTL
  ☆13Updated 5 years ago
• xqwen / torus
  QTL Discovery using Annotations
  ☆28Updated 3 years ago
• timflutre / eqtlbma
  Package to detect eQTLs jointly in multiple subgroups (e.g. tissues) via Bayesian Model Averaging.
  ☆23Updated 7 years ago
• RitchieLab / GWAS-QC
  Quality control steps for GWAS
  ☆26Updated 2 years ago
• caleblareau / gchromVAR
  Cell type specific enrichments using finemapped variants and quantitative epigenetic data
  ☆47Updated 2 years ago
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆48Updated 2 years ago
• hakyimlab / PredictDBPipeline
  ☆16Updated 5 years ago
• bsml320 / scGWAS
  A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …
  ☆26Updated 3 years ago
• jrs95 / gassocplot2
  Regional association plots
  ☆24Updated last year
• kjgleason / Primo
  Primo
  ☆16Updated 4 years ago
• RajLabMSSM / ggLocusZoom
  Create LocusZoom-style plots in R.
  ☆22Updated 2 years ago
• powellgenomicslab / onek1k_phase1
  Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types
  ☆37Updated 4 years ago
• thewonlab / H-MAGMA
  ☆35Updated 2 years ago
• yiminghu / post-GWAS-pipeline
  A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data
  ☆29Updated 3 years ago
• xinhe-lab / ctwas
  causal TWAS (cTWAS)
  ☆47Updated 2 weeks ago
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆35Updated 6 months ago
• yanglab-emory / TIGAR
  ☆22Updated 3 months ago