Alternatives and similar repositories for gtex-gwas-analysis

Users that are interested in gtex-gwas-analysis are comparing it to the libraries listed below

• douglasyao / mesc
  Mediated Expression Score Regression (MESC)
  ☆26Updated 3 years ago
• Kyoko-wtnb / FUMA_scRNA_data
  Descriptions/scripts for pre-process and processed data for FUMA cell specificity analyses (scRNA-seq)
  ☆23Updated 5 years ago
• xqwen / torus
  QTL Discovery using Annotations
  ☆25Updated 2 years ago
• powellgenomicslab / onek1k_phase1
  Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types
  ☆30Updated 3 years ago
• single-cell-genetics / limix_qtl
  ☆20Updated last year
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆53Updated last week
• thewonlab / H-MAGMA
  ☆33Updated 2 years ago
• clagiamba / moloc
  ☆35Updated 4 years ago
• jinghuazhao / TWAS-pipeline
  TWAS-pipeline
  ☆22Updated 4 years ago
• hakyimlab / PredictDBPipeline
  ☆15Updated 4 years ago
• anastasia-lucas / hudson
  An R package for creating mirrored Manhattan plots
  ☆18Updated 2 years ago
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆32Updated 4 years ago
• Jeremy37 / AD_finemap
  Code supporting analyses in paper on fine-mapping AD loci
  ☆15Updated 3 years ago
• immunogenomics / IMPACT
  Code for creating cell-type-specific regulatory element annotation files
  ☆18Updated last year
• eQTL-Catalogue / eQTL-Catalogue-resources
  ☆48Updated last month
• shengxin321 / HumanKidney_eQTL_and_snATAC-seq
  codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data
  ☆19Updated 4 years ago
• yanglab-emory / TIGAR
  ☆21Updated 2 months ago
• francois-a / fastqtl
  Enhanced version of the FastQTL QTL mapper
  ☆66Updated 2 years ago
• jxzb1988 / MMQTL
  MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…
  ☆11Updated 2 months ago
• jbryois / scRNA_disease
  Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1
  ☆18Updated 5 years ago
• weizhou0 / qtl
  ☆28Updated 2 weeks ago
• jrs95 / gassocplot2
  Regional association plots
  ☆25Updated last year
• RitchieLab / GWAS-QC
  Quality control steps for GWAS
  ☆23Updated last year
• xqwen / dap
  software package for integrative genetic association analysis
  ☆34Updated last year
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆45Updated last year
• Teichlab / innate_evo
  ☆10Updated 6 years ago
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆31Updated last week
• xihaoli / MetaSTAAR
  An R package for performing MetaSTAAR procedure in whole-genome sequencing studies
  ☆23Updated 7 months ago
• bhattacharya-a-bt / isotwas
  ☆22Updated 5 months ago
• cozygene / TCA
  ☆18Updated 4 years ago