MarioniLab / Deconvolution2016Links
Code and manuscript files for Aaron and Karsten's deconvolution paper.
☆16Updated 6 years ago
Alternatives and similar repositories for Deconvolution2016
Users that are interested in Deconvolution2016 are comparing it to the libraries listed below
Sorting:
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆23Updated 6 years ago
- post-clustering differential expression test☆36Updated 6 years ago
- easy access to benchmark datasets☆50Updated 7 years ago
- ☆16Updated 6 years ago
- Inference of switch-like differential expression along single-cell trajectories☆21Updated 8 years ago
- Descriptive probabilistic marker gene approach to single-cell pseudotime inference☆29Updated 5 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆32Updated 4 years ago
- Dimensionality reduction and batch integration methods for single cell data☆16Updated 2 years ago
- scRNA-seq data visualization from scrattch☆28Updated 2 months ago
- Linseed: LINear Subspace identification for gene Expresion Deconvolution☆31Updated 2 months ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 6 years ago
- Tutorial for the analysis of scRNA-seq data in R☆18Updated 7 years ago
- Comparison of dimensionality reduction methods☆30Updated 5 years ago
- ☆21Updated 8 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆11Updated 6 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- A method to rapidly assess cell type identity using both functional and random gene sets☆13Updated 6 years ago
- ☆20Updated 8 years ago
- Code used for the single-cell RNA-Seq batch effects paper☆10Updated 8 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Updated 6 years ago
- HSCI/Catalyst Single-cell RNA-Seq Workshop☆19Updated 6 years ago
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Updated 6 years ago
- Topics In Data Science and Bioinformatics☆79Updated last year
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆39Updated 3 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated 2 years ago
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆106Updated 2 years ago
- ☆29Updated 2 years ago
- Pathway-Level Information Extractor (PLIER): a generative model for gene expression data☆55Updated last year