MarioniLab / Deconvolution2016

Related projects ⓘ

Alternatives and complementary repositories for Deconvolution2016

• czbiohub-sf / tabula-muris-vignettes
  Examples analyses using the single-cell RNA-seq data from mouse cell atlases
  ☆23Updated 5 years ago
• jessemzhang / tn_test
  post-clustering differential expression test
  ☆35Updated 5 years ago
• czi-hca-comp-tools / easy-data
  easy access to benchmark datasets
  ☆50Updated 6 years ago
• nghiavtr / BPSC
  Beta-Poisson model for single-cell RNA-seq data analyses
  ☆16Updated 5 years ago
• theislab / pseudodynamics
  Dynamic models for single-cell RNA-seq time series.
  ☆39Updated 6 years ago
• markrobinsonuzh / scRNAseq_clustering_comparison
  A study to compare methods for clustering of scRNA-seq data
  ☆41Updated 4 months ago
• Teichlab / GPfates
  ☆19Updated 7 years ago
• ctlab / LinSeed
  Linseed: LINear Subspace identification for gene Expresion Deconvolution
  ☆28Updated 5 years ago
• SaskiaFreytag / cluster_benchmarking_code
  ☆16Updated 5 years ago
• quon-titative-biology / scAlign
  A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…
  ☆34Updated 3 years ago
• lkmklsmn / insct
  scRNAseq integration with triplet neural networks
  ☆39Updated last year
• randel / MIND
  Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution
  ☆43Updated last year
• klarman-cell-observatory / scSVA
  Single-cell Scalable Visualization and Analytics
  ☆25Updated 5 years ago
• igrabski / scRNAseq-cell-type
  Probabilistic gene expression barcodes for cell type annotation
  ☆25Updated 2 years ago
• pachterlab / NYMP_2018
  ☆29Updated 5 years ago
• LTLA / SingleCellThoughts
  Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.
  ☆44Updated 4 years ago
• MSingerLab / COMETSC
  COMET Single-Cell Marker Detection tool
  ☆31Updated 2 years ago
• pachterlab / GFCP_2022
  RNA velocity validation
  ☆23Updated 2 years ago
• shenorrLabTRDF / cellAlign
  ☆37Updated 3 years ago
• oganm / homologene
  An r package that works as a wrapper to homologene
  ☆42Updated last year
• pachterlab / BHGP_2022
  ☆21Updated 2 years ago
• YosefLab / scone
  ☆53Updated last month
• LTLA / scRNAseq
  Clone of the Bioconductor repository for the scRNAseq package.
  ☆24Updated 5 months ago
• anna-neufeld / countsplit
  ☆20Updated last year
• bioFAM / slalom
  ☆28Updated last year
• Teichlab / cellity
  ☆35Updated 8 years ago
• SingleCellTranscriptomics / ISMB2018_SingleCellTranscriptomeTutorial
  See: https://www.iscb.org/ismb2018/3511#am1
  ☆17Updated 6 years ago
• bioturing / signac
  An analytics package for single cell data
  ☆21Updated 2 years ago
• maggiecrow / MetaNeighbor
  ☆47Updated 6 years ago
• dgrun / RaceID
  Algorithm for the inference of cell types from single-cell RNA-seq data.
  ☆43Updated 8 years ago