Bioinformatic Tools for analyzing targeted amplicon sequencing developed by Nicholas Hathaway of Bailey Lab
☆17Dec 16, 2025Updated 2 months ago
Alternatives and similar repositories for SeekDeep
Users that are interested in SeekDeep are comparing it to the libraries listed below
Sorting:
- MEME motif-based sequence analysis tools (http://meme-suite.org), with FreeBSD tweaks☆15Jul 26, 2017Updated 8 years ago
- ☆14Feb 20, 2026Updated last week
- R package supporting interactive data access on BOLD☆13Oct 1, 2025Updated 5 months ago
- INC-Seq: Accurate single molecule reads using nanopore sequencing☆16Sep 11, 2020Updated 5 years ago
- Software to trim the ITS region of FASTQ sequences for amplicon sequencing analysis☆17Mar 26, 2025Updated 11 months ago
- FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.☆34Updated this week
- workflows for offline analysis of 16S rRNA Nanopore data☆16Jun 13, 2023Updated 2 years ago
- Pipeline to run qiime2 with snakemake☆18Apr 17, 2020Updated 5 years ago
- Taxa Insertion by Parsimony☆15Jan 22, 2025Updated last year
- Stitch together Nanopore tiled amplicon data without polishing a reference☆17Jan 29, 2024Updated 2 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Nov 18, 2023Updated 2 years ago
- Executable files for usearch versions 5 through 11, donated to the public domain☆24Jun 15, 2024Updated last year
- Biology 202 Course Website☆18Oct 1, 2020Updated 5 years ago
- Phylogenetic Likelihood Library☆29Dec 3, 2020Updated 5 years ago
- Genome-scale metabolic model of Methylococcus capsulatus.☆12Apr 12, 2019Updated 6 years ago
- efficient alignment of strings to partially ordered string graphs☆33Jan 31, 2022Updated 4 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Feb 3, 2023Updated 3 years ago
- USEARCH中文帮助文档(USEARCH Chinese manual)☆23Aug 1, 2024Updated last year
- frame-shift correction for long-read (meta)genomics☆33Dec 11, 2023Updated 2 years ago
- A C++14 library for NGS data formats☆39Aug 5, 2019Updated 6 years ago
- Prophage Activity Estimator☆31May 30, 2024Updated last year
- ☆33May 2, 2022Updated 3 years ago
- BitMapperBS: a fast and accurate read aligner for whole-genome bisulfite sequencing☆31Sep 15, 2019Updated 6 years ago
- Efficient base quality score recalibrator for NGS data☆24Nov 28, 2015Updated 10 years ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆32May 1, 2025Updated 10 months ago
- StriDe Assembler☆25Nov 23, 2017Updated 8 years ago
- A list of cool software for genetic analysis and the like☆12Sep 21, 2018Updated 7 years ago
- Fast, accurate taxonomic assignments for the human vaginal microbiota☆11Feb 11, 2026Updated 2 weeks ago
- A Lagrangian tool for simulating ichthyoplankton dynamics☆12Updated this week
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆37Aug 4, 2024Updated last year
- eDNA metabarcoding pipeline☆44Jan 22, 2026Updated last month
- A robust and fast clustering method for amplicon-based studies☆144Nov 8, 2025Updated 3 months ago
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆41Updated this week
- ☆36Nov 11, 2022Updated 3 years ago
- XML to a python dictionary☆11Sep 13, 2020Updated 5 years ago
- ☆16Jun 21, 2023Updated 2 years ago
- mytax is a tool for building custom taxonomies, useful for nucleotide sequence classification☆13Oct 9, 2025Updated 4 months ago
- ☆44Jan 23, 2026Updated last month
- ☆13May 27, 2025Updated 9 months ago