Bioinformatic Tools for analyzing targeted amplicon sequencing developed by Nicholas Hathaway of Bailey Lab
☆18Jul 23, 2026Updated last month
Alternatives and similar repositories for SeekDeep
Users that are interested in SeekDeep are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MEME motif-based sequence analysis tools (http://meme-suite.org), with FreeBSD tweaks☆18Jul 26, 2017Updated 9 years ago
- Repo for a Microbiome Protocol☆10Apr 26, 2018Updated 8 years ago
- INC-Seq: Accurate single molecule reads using nanopore sequencing☆16Sep 11, 2020Updated 6 years ago
- Pipeline to run qiime2 with snakemake☆18Apr 17, 2020Updated 6 years ago
- Taxa Insertion by Parsimony☆16Jan 22, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆51Jan 23, 2026Updated 8 months ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Nov 18, 2023Updated 2 years ago
- Stitch together Nanopore tiled amplicon data without polishing a reference☆18Jan 29, 2024Updated 2 years ago
- workflows for offline analysis of 16S rRNA Nanopore data☆17Jun 13, 2023Updated 3 years ago
- FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.☆37Mar 24, 2026Updated 5 months ago
- A small R notebook describing how plot common (aDNA) population genetics PCAs using R and the tidyverse.☆14May 3, 2019Updated 7 years ago
- ☆12Aug 31, 2017Updated 9 years ago
- Whole genome core alignments from multiple draft genomes☆13Sep 14, 2016Updated 10 years ago
- ☆13Dec 16, 2021Updated 4 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆13Mar 22, 2022Updated 4 years ago
- Nextflow pipeline designed for rapid onsite QC and variant calling of Oxford Nanopore data (following basecalling and demultiplexing with…☆13Jun 4, 2026Updated 3 months ago
- ☆38Nov 11, 2022Updated 3 years ago
- ☆15Aug 30, 2024Updated 2 years ago
- STARRPeaker: STARR-seq peak caller☆17Jul 6, 2022Updated 4 years ago
- Software to trim the ITS region of FASTQ sequences for amplicon sequencing analysis☆19Aug 17, 2026Updated last month
- A machine learning framework to predict antibiotic resistance traits and yet unknown genes underlying resistance to specific antibiotics …☆15Oct 6, 2022Updated 3 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Feb 3, 2023Updated 3 years ago
- eDNA metabarcoding pipeline☆49Sep 10, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- frame-shift correction for long-read (meta)genomics☆33Dec 11, 2023Updated 2 years ago
- ☆33May 2, 2022Updated 4 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆41Updated this week
- Pipeline to analyze eDNA metabarcoding samples (PE and SE, demultiplexed, multiplexed)☆12Jul 6, 2022Updated 4 years ago
- Efficient base quality score recalibrator for NGS data☆24Nov 28, 2015Updated 10 years ago
- Biology 202 Course Website☆18Oct 1, 2020Updated 5 years ago
- Identifying, understanding, and correcting technical biases on the sex chromosomes in next-generation sequencing data☆23Apr 11, 2019Updated 7 years ago
- StriDe Assembler☆25Nov 23, 2017Updated 8 years ago
- efficient alignment of strings to partially ordered string graphs☆33Apr 22, 2026Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Tip and tricks for VCF files☆21Sep 26, 2018Updated 7 years ago
- BitMapperBS: a fast and accurate read aligner for whole-genome bisulfite sequencing☆31Sep 15, 2019Updated 7 years ago
- Prophage Activity Estimator☆35May 30, 2024Updated 2 years ago
- ☆20Aug 19, 2026Updated last month
- The documentation for the Clustergrammer project☆10Oct 21, 2020Updated 5 years ago
- ☆44Nov 20, 2021Updated 4 years ago
- ☆45Mar 13, 2026Updated 6 months ago