☆34May 29, 2024Updated 2 years ago
Alternatives and similar repositories for ONTbarcoder
Users that are interested in ONTbarcoder are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GPU-accelerated DNA barcode classification☆14Jan 2, 2025Updated last year
- Reference-free clustering and consensus forming of long-read amplicon sequencing☆67Apr 21, 2025Updated last year
- fastq to polished sequenses: pipeline suitable for mixed samples and long (Nanopore) reads☆52Sep 24, 2025Updated 9 months ago
- A python package to query different databases of boldsystems.org☆32Oct 28, 2024Updated last year
- The MitoGeneExtractor can be used to extract protein coding mitochondrial genes, such as COI and others from short and long read sequenci…☆10Apr 5, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Taxonomic Reconstruction and Analysis of NGS Amplicons - A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads…☆22Jun 16, 2026Updated last month
- Sorts amplicons from Nanopore sequencing data based on similarity☆45Oct 9, 2025Updated 9 months ago
- R package supporting interactive data access on BOLD☆24Updated this week
- R package MiscMetabar: Miscellaneous functions for metabarcoding analysis☆21Jul 7, 2026Updated 2 weeks ago
- ☆30Dec 22, 2023Updated 2 years ago
- R mased batch sequence downloader, with primer development and in silico evaluation capabilities☆36Oct 30, 2024Updated last year
- Automatic Assembly For The Fungi☆27Jun 16, 2026Updated last month
- Quasitools is a collection of tools for analysing viral quasispecies data.☆27Nov 25, 2021Updated 4 years ago
- Scripts for building the ARTIC lab-on-an-SSD☆11Sep 9, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- PuntSeq - Chasing the microbial diversity of Cambridge's freshwater☆20Nov 12, 2020Updated 5 years ago
- Bug flow is a community resource for entomological collection digitization workflows and modules.☆25Jul 19, 2024Updated 2 years ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago
- Automated butterfly wing length measurement☆30Aug 2, 2023Updated 2 years ago
- Hybrid Assembler for Plasmids☆10Jul 28, 2022Updated 3 years ago
- INC-Seq: Accurate single molecule reads using nanopore sequencing☆16Sep 11, 2020Updated 5 years ago
- Locate transgenic insertion sites☆11Mar 14, 2023Updated 3 years ago
- The SpeciesPrimer pipeline is intended to help researchers finding specific primer pairs for the detection and quantification of bacteria…☆48Apr 24, 2024Updated 2 years ago
- NanoDJ: A Dockerized Jupyter Notebook for Interactive Oxford Nanopore MinION Sequence Manipulation and Genome Assembly☆51Dec 16, 2019Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆24Feb 2, 2026Updated 5 months ago
- 🍄 Qiime2 ITS classifiers for the UNITE database☆52May 18, 2026Updated 2 months ago
- Tutorials on phylogenetic and phylogenomic inference☆53May 4, 2025Updated last year
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Oct 30, 2023Updated 2 years ago
- MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R☆18Sep 5, 2025Updated 10 months ago
- Distance denoise by Entropy☆15Oct 17, 2025Updated 9 months ago
- ☆11May 26, 2023Updated 3 years ago
- Speedy versions of phyloseq functions☆48Apr 21, 2024Updated 2 years ago
- ☆19Jun 22, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Deploy Machine Learning Pipeline on AWS Fargate☆13Dec 8, 2022Updated 3 years ago
- Docker containers that demonstrate a proof of concept bwa alignment workflow☆14Jan 13, 2015Updated 11 years ago
- A tool to classify sequences of plasmid or chromosomal origin. A paper describing this tool is available at: https://journals.plos.org/pl…☆33Jun 17, 2024Updated 2 years ago
- Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference☆14Jun 9, 2026Updated last month
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆117Nov 20, 2023Updated 2 years ago
- ☆34Mar 9, 2026Updated 4 months ago
- Taxa Insertion by Parsimony☆16Jan 22, 2025Updated last year