nsoranzo / sspace_basicLinks
SSPACE Basic, SSAKE-based Scaffolding of Pre-Assembled Contigs after Extension
☆47Updated 5 years ago
Alternatives and similar repositories for sspace_basic
Users that are interested in sspace_basic are comparing it to the libraries listed below
Sorting:
- Synteny Imager☆65Updated last month
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆55Updated last year
- ☆84Updated 2 years ago
- Sorts amplicons from Nanopore sequencing data based on similarity☆41Updated 3 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆68Updated 4 years ago
- A tool for Racon polishing of miniasm assemblies☆78Updated 5 months ago
- MITObim - mitochondrial baiting and iterative mapping☆113Updated 5 years ago
- ONT assembly and Illumina polishing pipeline☆87Updated 5 years ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆148Updated 4 months ago
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆90Updated last year
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆17Updated 5 years ago
- Automates running of OrthoMCL software from http://orthomcl.org/common/downloads/software/v2.0/☆80Updated 5 years ago
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆40Updated 5 years ago
- DDBJ Fast Annotation and Submission Tool☆84Updated 4 months ago
- Development version of Easyfig☆104Updated 2 years ago
- Interactive quality assessment of genome assemblies☆118Updated this week
- SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …☆93Updated 2 months ago
- Long-read mock community experiments☆104Updated 4 years ago
- Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file☆76Updated last year
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆124Updated last week
- A scalable bacterial genome assembly, annotation and analysis pipeline☆74Updated 2 years ago
- Assembly statistic visualisation☆94Updated 2 years ago
- IS mapping software☆57Updated 4 years ago
- A fast whole-genome aligner based on de Bruijn graphs☆158Updated 7 months ago
- OPERA-MS - Hybrid Metagenomic Assembler☆99Updated last year
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆61Updated last year
- Long-read metagenomic analysis☆109Updated 2 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆120Updated 2 years ago
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆72Updated 3 years ago