nsoranzo / sspace_basicLinks
SSPACE Basic, SSAKE-based Scaffolding of Pre-Assembled Contigs after Extension
☆47Updated 4 years ago
Alternatives and similar repositories for sspace_basic
Users that are interested in sspace_basic are comparing it to the libraries listed below
Sorting:
- Synteny Imager☆63Updated 10 months ago
- Automates running of OrthoMCL software from http://orthomcl.org/common/downloads/software/v2.0/☆80Updated 4 years ago
- Sorts amplicons from Nanopore sequencing data based on similarity☆38Updated last month
- Development version of Easyfig☆98Updated last year
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- A tool for Racon polishing of miniasm assemblies☆76Updated last month
- ONT assembly and Illumina polishing pipeline☆89Updated 4 years ago
- ☆83Updated last year
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆72Updated 9 months ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 5 years ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆116Updated 3 weeks ago
- DDBJ Fast Annotation and Submission Tool☆79Updated 2 months ago
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆136Updated last year
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆42Updated 7 months ago
- ☆44Updated 8 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Assembly statistic visualisation☆90Updated last year
- OPERA-MS - Hybrid Metagenomic Assembler☆95Updated last year
- Long-read mock community experiments☆105Updated 3 years ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi …☆56Updated last year
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆145Updated 2 months ago
- MITObim - mitochondrial baiting and iterative mapping☆112Updated 4 years ago
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆47Updated 3 months ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆96Updated 3 months ago
- ☆71Updated last month
- PhyloFisher is a software package written in Python3 that can be used for the creation, analysis, and visualization of phylogenomic datas…☆32Updated last week
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆40Updated 5 years ago
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆80Updated 7 months ago
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆59Updated 5 years ago
- Automatically exported from code.google.com/p/prottest3☆37Updated 7 years ago