gramarga / ConPADELinks
Contig Ploidy and Allele Dosage Estimation
☆10Updated 10 years ago
Alternatives and similar repositories for ConPADE
Users that are interested in ConPADE are comparing it to the libraries listed below
Sorting:
- use paired-end transcriptome reads to scaffold genomes☆11Updated 6 years ago
- A tutorial for learning de novo assembly☆33Updated 14 years ago
- Repetitive motif detection by Assembly of Repetitive K-mers. RepARK is free for academic and non-profit use. By downloading you agree wit…☆16Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- compare sequences to a shared root reference sequence.☆24Updated 4 years ago
- FastK based version of Merqury☆30Updated 2 weeks ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 7 years ago
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Updated 9 years ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆25Updated 5 years ago
- Haploidy and Size Completeness Estimation☆14Updated last year
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 5 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Updated 6 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 5 years ago
- ☆31Updated 6 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 11 months ago
- The MafFilter genome alignment processor☆19Updated last month
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Updated last year
- A reliable gap filling pipeline for draft genomes☆11Updated 6 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Updated 2 years ago
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Scaffolding with assembly likelihood optimization☆21Updated 5 years ago
- ☆33Updated last year
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆21Updated 3 years ago
- A tool for discovering transposable elements and describing patterns of genome evolution☆31Updated 2 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆37Updated 3 years ago
- Visualising discordant reads☆15Updated 10 years ago
- Segmental Duplication Assembler (SDA).☆43Updated 2 years ago