gramarga / ConPADELinks
Contig Ploidy and Allele Dosage Estimation
☆10Updated 9 years ago
Alternatives and similar repositories for ConPADE
Users that are interested in ConPADE are comparing it to the libraries listed below
Sorting:
- Improved Phased Assembler☆28Updated 3 years ago
- A tutorial for learning de novo assembly☆33Updated 13 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 5 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 7 months ago
- ☆31Updated 5 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- compare sequences to a shared root reference sequence.☆24Updated 3 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 4 years ago
- De-novo Assembly Structural Variant Caller☆13Updated 9 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆21Updated last year
- ArchaicSeeker is a series of software for detecting archaic introgression sequences and reconstructing introgression history. The latest …☆18Updated 2 months ago
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago
- The MafFilter genome alignment processor☆19Updated 4 months ago
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- A tool for discovering transposable elements and describing patterns of genome evolution☆31Updated 2 years ago
- Making diploid assembly becomes common practice for genomic study☆30Updated 8 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆21Updated 3 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Updated 6 years ago
- use paired-end transcriptome reads to scaffold genomes☆11Updated 6 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- A module for improving the insertion sequences of structural variant calls☆32Updated 4 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆34Updated 2 years ago
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆27Updated 4 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- SV calling for diploid assemblies☆28Updated last year
- Visualising discordant reads☆15Updated 10 years ago
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆22Updated 6 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- ☆48Updated last year