gramarga / ConPADE
Contig Ploidy and Allele Dosage Estimation
☆10Updated 9 years ago
Related projects ⓘ
Alternatives and complementary repositories for ConPADE
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated last year
- Improved Phased Assembler☆28Updated 2 years ago
- assembly evaluation tool☆34Updated 2 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 2 years ago
- Repetitive motif detection by Assembly of Repetitive K-mers. RepARK is free for academic and non-profit use. By downloading you agree wit…☆16Updated 2 months ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 5 years ago
- A tutorial for learning de novo assembly☆33Updated 12 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 3 years ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆33Updated 6 years ago
- FastK based version of Merqury☆22Updated 3 weeks ago
- genomic alignment similarity search tool☆19Updated 5 months ago
- ☆31Updated 4 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆21Updated 4 years ago
- An easy way to run BioNano genomic analysis☆27Updated 3 years ago
- Simple script to generate whole-genome coverage plots☆18Updated 9 years ago
- Visualising discordant reads☆15Updated 9 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- Scaffolding with assembly likelihood optimization☆20Updated 3 years ago
- ☆32Updated 3 years ago
- ☆29Updated 2 years ago
- Identification of segmental duplications in the genome☆26Updated 2 years ago
- Automation of pipelines that depend on preexisting assembly, polishing, and alignment tools. Performance evaluation and visualization of …☆13Updated 4 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆19Updated 5 months ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- Population-wide Deletion Calling☆35Updated 2 months ago
- Add multiple thread function for genome comparison☆15Updated 3 years ago
- The MafFilter genome alignment processor☆17Updated 2 months ago
- Haploidy and Size Completeness Estimation☆13Updated 7 months ago