smithlabcode / falcoLinks
A C++ drop-in replacement of FastQC to assess the quality of sequence read data
☆116Updated last month
Alternatives and similar repositories for falco
Users that are interested in falco are comparing it to the libraries listed below
Sorting:
- A catalogue of available long read sequencing data analysis tools☆78Updated 2 weeks ago
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆88Updated last month
- Tips for Nextflow and cheatsheet for channel operation☆78Updated last year
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆115Updated last year
- Tip and tricks for BAM files☆86Updated 7 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA☆107Updated 3 weeks ago
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆106Updated 2 months ago
- Match up paired end fastq files quickly and efficiently.☆151Updated last year
- Trinotate source code☆82Updated last year
- The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…☆47Updated 2 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆142Updated 3 weeks ago
- BAM Statistics, Feature Counting and Annotation☆149Updated this week
- reference-free transcriptome assembly for short and long reads☆109Updated last year
- ☆123Updated last month
- ShortStack: Comprehensive annotation and quantification of small RNA genes☆93Updated 3 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆63Updated 11 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 4 months ago
- An efficient way to guess the library type of your RNA-Seq data.☆32Updated 2 years ago
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆88Updated 10 months ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆100Updated last month
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- Detecting contamination in NGS data and multi-species analysis☆78Updated 10 months ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆81Updated last week
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- A simple RNA-Seq differential gene expression pipeline using Nextflow☆100Updated last month
- Powerful statistics for VCF files☆70Updated 2 months ago
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆106Updated 2 months ago
- Merging paired-end reads and removing adapters☆46Updated 6 months ago
- BigWig and BAM utilities☆97Updated last year