Alternatives and similar repositories for falco

Users that are interested in falco are comparing it to the libraries listed below

• hzi-bifo / RiboDetector
  Accurate and rapid RiboRNA sequences Detector based on deep learning
  ☆116Updated last month
• danrlu / nextflow_cheatsheet
  Tips for Nextflow and cheatsheet for channel operation
  ☆79Updated last year
• IARCbioinfo / BAM-tricks
  Tip and tricks for BAM files
  ☆86Updated 7 years ago
• tobiasrausch / alfred
  BAM Statistics, Feature Counting and Annotation
  ☆152Updated last month
• mritchielab / long_read_tools
  A catalogue of available long read sequencing data analysis tools
  ☆83Updated last week
• parklab / bamsnap
  ☆122Updated 5 months ago
• louiejtaylor / grabseqs
  A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA
  ☆109Updated 5 months ago
• bcgsc / RNA-Bloom
  reference-free transcriptome assembly for short and long reads
  ☆108Updated last year
• Trinotate / Trinotate
  Trinotate source code
  ☆84Updated last year
• enasequence / enaBrowserTools
  A collection of scripts to assist in the retrieval of data from the ENA Browser
  ☆92Updated 5 months ago
• nf-core / differentialabundance
  Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
  ☆88Updated this week
• lh3 / bedtk
  A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)
  ☆143Updated 4 months ago
• nf-core / smrnaseq
  A small-RNA sequencing analysis pipeline
  ☆98Updated last week
• GenomiqueENS / toulligQC
  A post sequencing QC tool for Oxford Nanopore sequencers
  ☆106Updated last month
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆67Updated 8 months ago
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆83Updated 3 years ago
• smithlabcode / preseq
  Software for predicting library complexity and genome coverage in high-throughput sequencing.
  ☆91Updated 3 weeks ago
• ShiLab-Bioinformatics / subread
  The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…
  ☆52Updated 2 years ago
• linsalrob / fastq-pair
  Match up paired end fastq files quickly and efficiently.
  ☆153Updated last year
• tderrien / FEELnc
  FEELnc : FlExible Extraction of LncRNA
  ☆93Updated 5 months ago
• StevenWingett / FastQ-Screen
  Detecting contamination in NGS data and multi-species analysis
  ☆81Updated 2 months ago
• moiexpositoalonsolab / grenepipe
  A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…
  ☆111Updated 6 months ago
• MikeAxtell / ShortStack
  ShortStack: Comprehensive annotation and quantification of small RNA genes
  ☆97Updated 2 months ago
• giesselmann / nanopype
  Snakemake pipelines for nanopore sequencing data archiving and processing
  ☆91Updated 3 years ago
• telatin / seqfu2
  seqfu - Sequece Fastx Utilities
  ☆124Updated 3 weeks ago
• tao-bioinfo / gff3sort
  GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools
  ☆51Updated 5 years ago
• adamewing / methylartist
  Tools for plotting methylation data in various ways
  ☆166Updated last month
• cortes-ciriano-lab / savana
  Somatic structural variant caller for long-read data
  ☆87Updated 2 months ago
• 10XGenomics / supernova
  10x Genomics Linked-Read Diploid De Novo Assembler
  ☆65Updated 7 years ago
• epi2me-labs / wf-basecalling
  ☆47Updated last month