Alternatives and similar repositories for falco

Users that are interested in falco are comparing it to the libraries listed below

• louiejtaylor / grabseqs
  A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA
  ☆109Updated 4 months ago
• linsalrob / fastq-pair
  Match up paired end fastq files quickly and efficiently.
  ☆153Updated last year
• enasequence / enaBrowserTools
  A collection of scripts to assist in the retrieval of data from the ENA Browser
  ☆91Updated 4 months ago
• danrlu / nextflow_cheatsheet
  Tips for Nextflow and cheatsheet for channel operation
  ☆80Updated last year
• tobiasrausch / alfred
  BAM Statistics, Feature Counting and Annotation
  ☆152Updated 3 weeks ago
• lh3 / bedtk
  A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)
  ☆142Updated 4 months ago
• hzi-bifo / RiboDetector
  Accurate and rapid RiboRNA sequences Detector based on deep learning
  ☆116Updated last month
• giesselmann / nanopype
  Snakemake pipelines for nanopore sequencing data archiving and processing
  ☆91Updated 3 years ago
• mritchielab / long_read_tools
  A catalogue of available long read sequencing data analysis tools
  ☆83Updated 3 months ago
• MikeAxtell / ShortStack
  ShortStack: Comprehensive annotation and quantification of small RNA genes
  ☆97Updated 2 months ago
• parklab / bamsnap
  ☆122Updated 4 months ago
• StevenWingett / FastQ-Screen
  Detecting contamination in NGS data and multi-species analysis
  ☆80Updated last month
• ShiLab-Bioinformatics / subread
  The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…
  ☆52Updated 2 years ago
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆67Updated 7 months ago
• adamewing / methylartist
  Tools for plotting methylation data in various ways
  ☆166Updated last month
• telatin / seqfu2
  seqfu - Sequece Fastx Utilities
  ☆124Updated this week
• RAHenriksen / NGSNGS
  NGSNGS: Next generation simulator for next generation sequencing data
  ☆56Updated last year
• IARCbioinfo / BAM-tricks
  Tip and tricks for BAM files
  ☆86Updated 7 years ago
• GenomiqueENS / toulligQC
  A post sequencing QC tool for Oxford Nanopore sequencers
  ☆105Updated 2 weeks ago
• nf-core / smrnaseq
  A small-RNA sequencing analysis pipeline
  ☆98Updated this week
• biocorecrg / master_of_pores
  Nextflow pipeline for analysis of direct RNA Nanopore reads
  ☆109Updated last month
• epi2me-labs / wf-basecalling
  ☆47Updated 2 weeks ago
• bcgsc / RNA-Bloom
  reference-free transcriptome assembly for short and long reads
  ☆107Updated last year
• moiexpositoalonsolab / grenepipe
  A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…
  ☆111Updated 6 months ago
• Zhong-Lab-UCSD / Genomic-Interactive-Visualization-Engine
  Genomic Interactive Visualization Engine
  ☆146Updated 2 years ago
• ComparativeGenomicsToolkit / hal
  Hierarchical Alignment Format
  ☆173Updated 2 weeks ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆120Updated 2 months ago
• nf-core / differentialabundance
  Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
  ☆86Updated 2 weeks ago
• nanoporetech / pipeline-transcriptome-de
  Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
  ☆108Updated 2 years ago
• 10XGenomics / supernova
  10x Genomics Linked-Read Diploid De Novo Assembler
  ☆65Updated 7 years ago