smithlabcode / falcoLinks
A C++ drop-in replacement of FastQC to assess the quality of sequence read data
☆124Updated 5 months ago
Alternatives and similar repositories for falco
Users that are interested in falco are comparing it to the libraries listed below
Sorting:
- Match up paired end fastq files quickly and efficiently.☆153Updated last year
- Tips for Nextflow and cheatsheet for channel operation☆79Updated last year
- A catalogue of available long read sequencing data analysis tools☆85Updated last month
- A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA☆109Updated 5 months ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆68Updated 8 months ago
- BAM Statistics, Feature Counting and Annotation☆151Updated 2 weeks ago
- FEELnc : FlExible Extraction of LncRNA☆93Updated 6 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 4 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆143Updated 5 months ago
- ☆122Updated 6 months ago
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆93Updated 6 months ago
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆119Updated 2 months ago
- reference-free transcriptome assembly for short and long reads☆108Updated 2 years ago
- BigWig and BAM utilities☆102Updated last year
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆94Updated last month
- Detecting contamination in NGS data and multi-species analysis☆82Updated 2 months ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆89Updated last week
- A tool to identify, orient, trim and rescue full length cDNA reads☆83Updated 3 years ago
- Check strandedness of RNA-Seq fastq files☆128Updated 3 years ago
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆109Updated 2 months ago
- ShortStack: Comprehensive annotation and quantification of small RNA genes☆97Updated 3 months ago
- The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…☆54Updated 2 years ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 3 years ago
- A small-RNA sequencing analysis pipeline☆98Updated 3 weeks ago
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆50Updated 5 years ago
- A simple RNA-Seq differential gene expression pipeline using Nextflow☆101Updated 6 months ago
- Genomic Interactive Visualization Engine☆146Updated 3 years ago
- Tools for plotting methylation data in various ways☆169Updated 2 months ago