Schiffels-Popgen / popgen_courseLinks
A course with Jupyter Notebooks for Computational Population Genetics
☆10Updated 3 years ago
Alternatives and similar repositories for popgen_course
Users that are interested in popgen_course are comparing it to the libraries listed below
Sorting:
- https://filippob.github.io/introduction_to_gwas/☆22Updated 6 months ago
- An R script to generate plots for ADMIXTURE runs, for multiple K values.☆19Updated 10 months ago
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Updated 3 years ago
- An R interface for the ADMIXTOOLS software☆34Updated last month
- A textbook on population genetics☆18Updated this week
- SEEKIN: SEquence-based Estimation of KINship☆14Updated 8 years ago
- Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…☆38Updated 2 years ago
- Experimental EIGENSOFT performance improvements.☆21Updated 11 years ago
- Scripts for bioinformatics data processing and analysis☆12Updated 2 years ago
- Population Genomics in R workshop☆12Updated last year
- Analysis of inference methods on standard population models☆25Updated 4 years ago
- This is a tool to estimate pairwise relatedness from ancient DNA, taking in account contamination, ROH, ascertainment bias.☆12Updated last year
- Method for dating admixture in ancient DNA specimens☆28Updated 3 years ago
- Software to call ROHs☆17Updated 2 months ago
- Module for analysing admixture graphs☆29Updated 7 years ago
- A guide to manipulating genotypic data across the common formats: VCF, EIGENSTRAT and PLINK (PACKEDPED) files. Includes how to convert be…☆23Updated 2 years ago
- Mixed Model Package For Genome-wide association mapping.☆17Updated 6 years ago
- A series of scripts to automate sequence workflows☆19Updated 7 months ago
- EM-PCA for Ultra-low Coverage Sequencing Data☆18Updated 3 weeks ago
- small scripts, functions or bits of code for parsing genomic data☆14Updated 3 years ago
- ☆31Updated last week
- ☆13Updated 9 years ago
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 7 years ago
- Genomic Annotation in Livestock for positional candidate LOci☆13Updated 4 years ago
- ☆13Updated last year
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Updated 2 years ago
- ☆45Updated 9 months ago
- ☆11Updated 3 years ago
- Workflow for processing Illumina sequencing runs for ancient human DNA☆25Updated 5 years ago
- This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes☆11Updated 7 years ago