Schiffels-Popgen / popgen_courseLinks
A course with Jupyter Notebooks for Computational Population Genetics
☆10Updated 3 years ago
Alternatives and similar repositories for popgen_course
Users that are interested in popgen_course are comparing it to the libraries listed below
Sorting:
- This is a tool to estimate pairwise relatedness from ancient DNA, taking in account contamination, ROH, ascertainment bias.☆10Updated last year
- Software to call ROHs☆17Updated this week
- An R script to generate plots for ADMIXTURE runs, for multiple K values.☆19Updated 7 months ago
- Experimental EIGENSOFT performance improvements.☆21Updated 10 years ago
- https://filippob.github.io/introduction_to_gwas/☆21Updated 3 months ago
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Updated 2 years ago
- SEEKIN: SEquence-based Estimation of KINship☆14Updated 8 years ago
- Scripts for bioinformatics data processing and analysis☆12Updated last year
- An R package for reproducible and automated ADMIXTOOLS analyses☆33Updated 7 months ago
- Analysis of inference methods on standard population models☆25Updated 3 years ago
- Population Genomics in R workshop☆12Updated last year
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Updated 2 years ago
- A textbook on population genetics☆18Updated 9 months ago
- Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…☆38Updated last year
- EM-PCA for Ultra-low Coverage Sequencing Data☆18Updated last month
- This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes☆11Updated 7 years ago
- ☆12Updated last year
- ☆20Updated last year
- Coprolite host Identification pipeline☆13Updated 3 months ago
- De novo lncRNA discovery pipeline, re-write of PLAR in shell and awk☆10Updated 2 years ago
- The fastest VCF/BCF parser in R https://doi.org/10.1093/bioinformatics/btae049☆17Updated last month
- ☆13Updated 9 years ago
- ☆44Updated 6 months ago
- A series of scripts to automate sequence workflows☆19Updated 4 months ago
- Workflow for processing Illumina sequencing runs for ancient human DNA☆24Updated 4 years ago
- Instructions and helpful R code for Running GEMMA and GAPIT☆13Updated 8 years ago
- Pipeline for eukaryotic genome annotation based on external evidences☆13Updated 2 years ago
- ☆12Updated last year
- Automated Rice Variant calling workflow for HPC, Cloud and Desktop systems.☆13Updated last year
- small scripts, functions or bits of code for parsing genomic data☆14Updated 3 years ago