Alternatives and similar repositories for popgen_course

Users that are interested in popgen_course are comparing it to the libraries listed below

• DivyaratanPopli / Kinship_Inference
  This is a tool to estimate pairwise relatedness from ancient DNA, taking in account contamination, ROH, ascertainment bias.
  ☆10Updated last year
• TCLamnidis / AdmixturePlotter
  An R script to generate plots for ADMIXTURE runs, for multiple K values.
  ☆19Updated 5 months ago
• hhwagner1 / LandGenCourse_book
  ☆12Updated last year
• filippob / introduction_to_gwas
  https://filippob.github.io/introduction_to_gwas/
  ☆20Updated last month
• hringbauer / hapROH
  Software to call ROHs
  ☆16Updated 3 months ago
• Rowena-h / FusariumLifestyles
  Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣
  ☆11Updated 2 years ago
• thomasblankers / popgen
  A collection of scripts I wrote when doing population genetics: calculate GC content, perform the McDonald-Kreitman test, calculate Tajim…
  ☆9Updated last year
• jpuritz / BIO_594_2023
  ☆8Updated 2 years ago
• bodkan / admixr
  An R package for reproducible and automated ADMIXTOOLS analyses
  ☆33Updated 5 months ago
• dyerlab / applied_population_genetics
  A textbook on population genetics
  ☆18Updated 7 months ago
• raymondkiu / R-scripts-graphing-statistics
  My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq
  ☆12Updated 2 years ago
• StephanePeyregne / AuthentiCT
  ☆12Updated last year
• mijangos81 / PopGenR
  Population Genomics in R workshop
  ☆12Updated last year
• oeco28 / Cacao_Genomics
  This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes
  ☆11Updated 6 years ago
• mahajrod / MAVR
  various bioinformatic instruments
  ☆8Updated 5 months ago
• augusto-garcia / onemap
  Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…
  ☆38Updated last year
• PickrellLab / gwas-pw-paper
  ☆13Updated 9 years ago
• melop / killigenomics
  Killifish genomics scripts
  ☆12Updated 4 years ago
• wl13 / BioScripts
  Scripts for bioinformatics data processing and analysis
  ☆12Updated last year
• songtaogui / pan-Zea_utilities
  the miscellaneous analysis scripts used in the research of pan-Zea genome and genetics
  ☆17Updated 2 years ago
• popsim-consortium / analysis
  Analysis of inference methods on standard population models
  ☆25Updated 3 years ago
• UPSCb / UPSCb-common
  Common scripts
  ☆14Updated this week
• tkchafin / scripts
  Random scripts, mostly for dealing with RADseq data and DNA sequence alignments
  ☆18Updated 2 years ago
• zhaoshuoxp / lncRNA
  De novo lncRNA discovery pipeline, re-write of PLAR in shell and awk
  ☆10Updated 2 years ago
• rojaff / LanGen_pipeline
  Suit of R-scripts to perform landscape genomic analyses
  ☆14Updated 5 years ago
• KamilSJaron / generic_genomics
  small scripts, functions or bits of code for parsing genomic data
  ☆14Updated 2 years ago
• ZhaoTingzju / GWAS_script
  Working on cotton resequencing
  ☆11Updated 5 years ago
• chrchang / eigensoft
  Experimental EIGENSOFT performance improvements.
  ☆22Updated 10 years ago
• ben-laufer / Tag-seq
  3’ Tag RNA-seq pipeline (Work in progress)
  ☆10Updated 4 years ago
• priyamoorjani / DATES
  Method for dating admixture in ancient DNA specimens
  ☆27Updated 3 years ago