williamslab / ibis
Algorithm for rapid, phase-free detection of long identical by descent segments
☆18Updated 7 months ago
Related projects ⓘ
Alternatives and complementary repositories for ibis
- Ascertained Sequentially Markovian Coalescent☆15Updated this week
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆14Updated 8 months ago
- Functions to compare a SV call sets against a truth set.☆26Updated 6 months ago
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated 3 months ago
- Novel Adjacency Identification with Barcoded Reads☆13Updated 2 years ago
- Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)☆14Updated last year
- TreeBeST: Tree Building guided by Species Tree☆14Updated 13 years ago
- Nanopore Real-Time Analysis Tool☆15Updated 2 months ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆15Updated 6 years ago
- Sweep Inference Framework (controlling for correlation)☆28Updated 4 months ago
- Combine reference and assembled transcriptomes for RNA-Seq analysis☆21Updated 4 years ago
- ☆20Updated 7 months ago
- ☆23Updated 5 years ago
- R-package: Calculation of haplotype blocks and libraries☆28Updated 8 months ago
- Two locus likelihoods and ARGs under changing population size☆12Updated 3 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆13Updated 5 years ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20Updated 2 years ago
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆21Updated 2 months ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆14Updated 3 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆19Updated 3 weeks ago
- All JBrowse plugins created by Brigitte Hofmeister☆10Updated 6 years ago
- Interactive eQTL visualizations☆13Updated last year
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- A command line tool to compute mapping statistics from a BAM file☆22Updated 2 years ago
- A python wrapper around SURVIVOR☆20Updated 9 months ago
- Method to optimally select samples for validation and resequencing☆26Updated 3 years ago
- A flexible tool for the multi-resolution localization of causal variants across the genome, accounting for population structure.☆14Updated 2 years ago