williamslab / ibisLinks
Algorithm for rapid, phase-free detection of long identical by descent segments
☆22Updated last year
Alternatives and similar repositories for ibis
Users that are interested in ibis are comparing it to the libraries listed below
Sorting:
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆64Updated last month
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated 3 months ago
- SNP genotyping in polyploids☆17Updated 5 years ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆22Updated 3 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated 4 months ago
- Demographic inference from whole genomes☆13Updated 3 years ago
- Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…☆38Updated last year
- Tools for merging Tandem Repeat VCF files☆35Updated 6 months ago
- Haplotype and population structure inference using neural networks.☆27Updated 10 months ago
- Sweep Inference Framework (controlling for correlation)☆29Updated last year
- ☆20Updated 5 years ago
- ☆44Updated 7 months ago
- machine learning applications for dadi☆15Updated 9 months ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.☆18Updated 8 years ago
- A command line tool to compute mapping statistics from a BAM file☆25Updated 3 years ago
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- Tools for inference of the DFE with dadi☆14Updated 4 years ago
- Easy genomic regions for short-read variant calling☆44Updated last month
- UCSC liftOver (genome build converter) for vcf format☆12Updated 7 years ago
- Flexible linear mixed model framework for Genome Wide Association Studies☆18Updated 3 weeks ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- Repository for pipeline code☆26Updated last year
- SparsePainter: fast, accurate and fine-scale chromosome painting software based on PBWT and HashMap☆17Updated last month
- ☆31Updated last month
- Module for analysing admixture graphs☆28Updated 7 years ago
- Integrative analysis of structural variations.☆40Updated last year
- Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)☆15Updated 2 years ago
- Evaluation of phasing performance☆23Updated 7 years ago
- ☆15Updated 5 years ago