williamslab / ibisLinks
Algorithm for rapid, phase-free detection of long identical by descent segments
☆20Updated last year
Alternatives and similar repositories for ibis
Users that are interested in ibis are comparing it to the libraries listed below
Sorting:
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- R-package: Calculation of haplotype blocks and libraries☆30Updated 4 months ago
- Sweep Inference Framework (controlling for correlation)☆29Updated 11 months ago
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆14Updated last year
- Population-wide Deletion Calling☆35Updated 2 months ago
- Tools for merging Tandem Repeat VCF files☆29Updated last month
- Transfer coordinates across genomes☆23Updated last month
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated last month
- rMETL - realignment-based Mobile Element insertion detection Tool for Long read☆18Updated 10 months ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆21Updated 3 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago
- Structural variant (SV) analysis tools☆36Updated 11 months ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated 2 years ago
- Two locus likelihoods and ARGs under changing population size☆14Updated 2 months ago
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- Evaluation of phasing performance☆23Updated 7 years ago
- Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)☆15Updated 2 years ago
- Ascertained Sequentially Markovian Coalescent☆16Updated 7 months ago
- Haplotype and population structure inference using neural networks.☆27Updated 6 months ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆16Updated 7 years ago
- A tool for phasing and imputing haplotypes in 10k+ low coverage sequencing samples☆10Updated 4 years ago
- Work for the tree sequence inference paper.☆23Updated 4 years ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆12Updated 3 years ago
- Software for detecting transposable element insertions from next-generation sequencing data☆14Updated 4 years ago
- ☆14Updated last year
- SV genotyping with long reads☆39Updated last year
- Infer the age of ancestral nodes in a tree sequence.☆21Updated 3 weeks ago