Alternatives and similar repositories for ibis

Users that are interested in ibis are comparing it to the libraries listed below

• AgResearch / KGD
  Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment
  ☆21Updated 3 weeks ago
• lntran26 / donni
  machine learning applications for dadi
  ☆16Updated 9 months ago
• luntergroup / smcsmc
  Demographic inference from whole genomes
  ☆13Updated 3 years ago
• pblischak / polyploid-genotyping
  SNP genotyping in polyploids
  ☆17Updated 5 years ago
• gravelLab / tracts
  A set of tools for modelling ancestry patterns along the genome.
  ☆23Updated last week
• Rosemeis / HaploNet
  Haplotype and population structure inference using neural networks.
  ☆27Updated 11 months ago
• jmonlong / sveval
  Functions to compare a SV call sets against a truth set.
  ☆30Updated 5 months ago
• ramachandran-lab / SWIFr
  Sweep Inference Framework (controlling for correlation)
  ☆29Updated last year
• ANGSD / NgsRelate
  ☆44Updated 8 months ago
• ywchoi / phasing
  Evaluation of phasing performance
  ☆23Updated 7 years ago
• LohmuellerLab / fitdadi
  Tools for inference of the DFE with dadi
  ☆14Updated 4 years ago
• rwdavies / QUILT
  QUILT: Low coverage whole genome sequence imputation with large reference panels
  ☆65Updated last week
• tpook92 / HaploBlocker
  R-package: Calculation of haplotype blocks and libraries
  ☆34Updated 3 months ago
• YaolingYang / SparsePainter
  SparsePainter: fast, accurate and fine-scale chromosome painting software based on PBWT and HashMap
  ☆17Updated 2 months ago
• yairf / SDS
  R code to compute the Singleton Density Score (SDS)
  ☆31Updated 9 years ago
• mcveanlab / treeseq-inference
  Work for the tree sequence inference paper.
  ☆23Updated 5 years ago
• xin-huang / dadi-cli
  Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra
  ☆18Updated 3 months ago
• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆29Updated 2 years ago
• msesia / knockoffgwas
  A flexible tool for the multi-resolution localization of causal variants across the genome, accounting for population structure.
  ☆15Updated 3 years ago
• mailund / admixture_graph
  Module for analysing admixture graphs
  ☆29Updated 7 years ago
• popgenmethods / SINGER
  Sampling and inference of genealogies with recombination
  ☆46Updated 5 months ago
• devillemereuil / bayescenv
  BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.
  ☆18Updated 8 years ago
• timbeissinger / Maize-Teo-Scripts
  ☆17Updated 9 years ago
• sriramlab / SCOPE
  Scalable population structure inference
  ☆18Updated 3 years ago
• jjberg2 / PolygenicAdaptationCode
  ☆20Updated 5 years ago
• grenaud / vgan
  Suite of tools for pangenomics built using vg
  ☆24Updated 4 months ago
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 7 months ago
• mdrasmus / argweaver
  Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)
  ☆57Updated 10 years ago
• jaredgk / PPP
  Repository for pipeline code
  ☆26Updated last year
• danjlawson / badMIXTURE
  R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes
  ☆27Updated 6 years ago