williamslab / ped-simLinks
Pedigree simulator
☆28Updated last week
Alternatives and similar repositories for ped-sim
Users that are interested in ped-sim are comparing it to the libraries listed below
Sorting:
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- Merging paired-end reads and removing adapters☆30Updated 5 years ago
- gia: Genomic Interval Arithmetic☆64Updated last year
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated last month
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Updated 4 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- Minor Variant Calling and Phasing Tools☆15Updated 3 years ago
- A toolkit for performing set operations - union, intersection and complement - on k-mer lists.☆34Updated 3 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆28Updated last year
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Fast sequencing data quality metrics☆31Updated 3 months ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Updated 4 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆47Updated 3 months ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- Python bindings for Bifrost's compacted colored de Bruijn Graph with a NetworkX-compatible API☆27Updated 2 years ago
- Tumour-only somatic mutation calling using long reads☆28Updated last year
- Genome browser hub for the T2T genomes and resources☆25Updated 2 months ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- Structural variant caller☆55Updated 4 years ago
- Structural variant (SV) analysis tools☆39Updated last year
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 5 months ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆39Updated 2 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Updated 6 years ago
- Fast FASTQ sample demultiplexing in Rust.☆66Updated 3 weeks ago
- Quality of life improvements for Bioinformatics in Python.☆31Updated last week
- for visual evaluation of read support for structural variation☆55Updated last year
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- Estimating k-mer coverage histogram of genomics data☆77Updated 2 years ago