A Java based tool to determine damage patterns on ancient DNA as a replacement for mapDamage
☆18Nov 18, 2023Updated 2 years ago
Alternatives and similar repositories for DamageProfiler
Users that are interested in DamageProfiler are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Damage parameter estimation for ancient DNA☆19Apr 8, 2025Updated last year
- Genome Analysis Workshop (Jena 2016) material☆18Mar 3, 2017Updated 9 years ago
- mapDamage: tracking and quantifying damage patterns in ancient DNA sequences☆49Jul 14, 2025Updated 10 months ago
- Detecting IBD within low coverage ancient DNA data. Development Repository for software package that contains code for manuscript.☆15Apr 22, 2026Updated last month
- Automatically exported from code.google.com/p/malder☆11Mar 17, 2015Updated 11 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Compute postmortem damage patterns and decontaminate ancient genomes☆20Apr 20, 2021Updated 5 years ago
- Ancient microbiome snakemake workflow☆28May 11, 2026Updated 2 weeks ago
- ☆47May 16, 2026Updated last week
- ☆52May 12, 2026Updated 2 weeks ago
- Maximum a posteriori estimate of contamination for ancient samples☆24Nov 4, 2025Updated 6 months ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆50Mar 6, 2026Updated 2 months ago
- Introduction to Ancient Metagenomics Book☆15Apr 10, 2026Updated last month
- ☆11Sep 4, 2024Updated last year
- Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria☆19Jul 29, 2013Updated 12 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Population Genomics in R workshop☆12Mar 24, 2024Updated 2 years ago
- This is a tool to estimate pairwise relatedness from ancient DNA, taking in account contamination, ROH, ascertainment bias.☆15Aug 6, 2024Updated last year
- Repository containing lists of all published ancient metagenomic (and related) samples and libraries☆81May 7, 2026Updated 2 weeks ago
- ☆15Jun 26, 2025Updated 11 months ago
- A statistical framework for reference-free inference of archaic local ancestry☆15Nov 8, 2019Updated 6 years ago
- Method for dating admixture in ancient DNA specimens☆32Jan 12, 2022Updated 4 years ago
- Pedigree simulator☆32Dec 15, 2025Updated 5 months ago
- AncestralPaths is a local ancestry painting technique based on genealogies produced by RELATE. The method aims to assign 'path' ancestrie…☆11Jun 29, 2023Updated 2 years ago
- Python script for calling SNPs, MNPs, and indels in mitochondrial DNA.☆10Apr 19, 2016Updated 10 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A course with Jupyter Notebooks for Computational Population Genetics☆10Sep 4, 2022Updated 3 years ago
- ☆14May 30, 2024Updated last year
- Madhav Sales Analysis and Power Bi Dashboard☆12Dec 23, 2023Updated 2 years ago
- A pipeline for construction and graphical visualization of annotated pangenome networks.☆16Oct 24, 2018Updated 7 years ago
- Inference of population structure from time-series genotype data☆15Jul 9, 2019Updated 6 years ago
- Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data☆26Jul 8, 2022Updated 3 years ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆18Apr 4, 2023Updated 3 years ago
- TOPAS application for simulating clustered DNA damage☆12Sep 9, 2025Updated 8 months ago
- discoal is a coalescent simulation program capable of simulating models with recombination, selective sweeps, and demographic changes inc…☆49May 6, 2026Updated 2 weeks ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- The SPrime program identifies variants that are introgressed from archaic populations.☆28May 21, 2022Updated 4 years ago
- A k-mer-based maximum likelihood method for estimating distances of reads to genomes and phylogenetic placement.☆23May 16, 2026Updated last week
- Exploration, clustering, visualization and classification of DNA damage patterns☆19Jan 15, 2021Updated 5 years ago
- ☆15Dec 3, 2024Updated last year
- ☆48Oct 17, 2025Updated 7 months ago
- Haplotype aware de novo assembly of diploid genome from long reads☆54Mar 16, 2022Updated 4 years ago
- A post-mapping authentication toolkit for ancient metagenomics☆21Mar 30, 2026Updated last month