A Java based tool to determine damage patterns on ancient DNA as a replacement for mapDamage
☆22Nov 18, 2023Updated 2 years ago
Alternatives and similar repositories for DamageProfiler
Users that are interested in DamageProfiler are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Damage parameter estimation for ancient DNA☆19Aug 26, 2026Updated last month
- This is a tool to estimate pairwise relatedness from ancient DNA, taking in account contamination, ROH, ascertainment bias.☆16Aug 6, 2024Updated 2 years ago
- mapDamage: tracking and quantifying damage patterns in ancient DNA sequences☆53Jul 14, 2025Updated last year
- Introduction to Ancient Metagenomics Book☆16Sep 20, 2026Updated 3 weeks ago
- Ancient microbiome snakemake workflow☆34Jun 12, 2026Updated 4 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Genome Analysis Workshop (Jena 2016) material☆18Aug 14, 2026Updated 2 months ago
- Detecting IBD within low coverage ancient DNA data. Development Repository for software package that contains code for manuscript.☆17Sep 5, 2026Updated last month
- Pipelines and tools for the processing of ancient and modern HTS data.☆50Updated this week
- A pipeline for the analysis of sedimentary ancient mtDNA.☆18Aug 26, 2026Updated last month
- ☆19Jun 26, 2025Updated last year
- Automatically exported from code.google.com/p/malder☆11Mar 17, 2015Updated 11 years ago
- Compute postmortem damage patterns and decontaminate ancient genomes☆23Apr 20, 2021Updated 5 years ago
- Repository containing lists of all published ancient metagenomic (and related) samples and libraries☆87Updated this week
- This project is a collection of tools for bioinformatic processing of ancient DNA data at the Harvard Medical School Reich Lab.☆29Aug 21, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆52May 12, 2026Updated 5 months ago
- ☆50Jun 26, 2026Updated 3 months ago
- ☆18Dec 3, 2024Updated last year
- A repo with just adapter sequences☆14Jul 7, 2025Updated last year
- Scripts and notes on how to analyse ancient DNA genotype data to understand population structure☆48Jul 27, 2023Updated 3 years ago
- Maximum a posteriori estimate of contamination for ancient samples☆25Sep 28, 2026Updated 2 weeks ago
- A post-mapping authentication toolkit for ancient metagenomics☆24Mar 30, 2026Updated 6 months ago
- mapping pipeline for ancient DNA☆35Sep 2, 2026Updated last month
- Combine structural variation outputs from long sequencing reads into a superior call set☆19Aug 6, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria☆19Jul 29, 2013Updated 13 years ago
- Workflow for processing Illumina sequencing runs for ancient human DNA☆28Oct 29, 2020Updated 5 years ago
- ☆17May 30, 2024Updated 2 years ago
- ☆10Sep 4, 2024Updated 2 years ago
- Population Genomics in R workshop☆13Mar 24, 2024Updated 2 years ago
- R package for handling linelist data☆11Jun 6, 2026Updated 4 months ago
- A fully reproducible and state-of-the-art ancient DNA analysis pipeline☆213Updated this week
- A statistical framework for reference-free inference of archaic local ancestry☆15Nov 8, 2019Updated 6 years ago
- Parallelised and automated construction of metagenomic classifier databases of different tools☆22Oct 8, 2026Updated last week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Method for dating admixture in ancient DNA specimens☆34Jan 12, 2022Updated 4 years ago
- Madhav Sales Analysis and Power Bi Dashboard☆13Dec 23, 2023Updated 2 years ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆19Apr 4, 2023Updated 3 years ago
- R package with social contact data for 177 regions (Prem et al. 2017; Prem et al. 2021)☆11Jul 11, 2025Updated last year
- gargammel is an ancient DNA simulator☆39Sep 25, 2026Updated 2 weeks ago
- Python script for calling SNPs, MNPs, and indels in mitochondrial DNA.☆10Apr 19, 2016Updated 10 years ago
- AncestralPaths is a local ancestry painting technique based on genealogies produced by RELATE. The method aims to assign 'path' ancestrie…☆11Jun 29, 2023Updated 3 years ago