shilab / STICILinks
STICI source code
☆18Updated last week
Alternatives and similar repositories for STICI
Users that are interested in STICI are comparing it to the libraries listed below
Sorting:
- Haplotype and population structure inference using neural networks.☆27Updated 6 months ago
- Evaluation of phasing performance☆23Updated 7 years ago
- R code to compute the Singleton Density Score (SDS)☆31Updated 8 years ago
- Large scale ancestry inference from PCA data☆22Updated 2 years ago
- SparsePainter: fast, accurate and fine-scale chromosome painting software based on PBWT and HashMap☆12Updated last month
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆61Updated this week
- R-package: Calculation of haplotype blocks and libraries☆30Updated 3 months ago
- Here we present a method to plot the outputs of RFMIX version 2☆23Updated 9 months ago
- Genealogical Estimation of Variant Age (GEVA)☆29Updated 3 years ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- A set of tools for modelling ancestry patterns along the genome.☆22Updated 4 months ago
- Structural variant merging tool☆50Updated 9 months ago
- Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)☆23Updated 2 weeks ago
- Repository for code to produce phased 1000 Genomes Project haplotypes called against the CHM13v2 T2T reference genome.☆13Updated 3 months ago
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆36Updated 10 months ago
- ☆23Updated last year
- The SPrime program identifies variants that are introgressed from archaic populations.☆24Updated 3 years ago
- A tool for phasing and imputing haplotypes in 10k+ low coverage sequencing samples☆10Updated 4 years ago
- ARG-based inference of selection using deep learning☆18Updated last year
- A software package for local ancestry inference and haplotype phasing☆40Updated 2 years ago
- ☆21Updated 2 months ago
- Improving gene isoform quantification with miniQuant☆15Updated 2 weeks ago
- Evolutionary Transcriptomics with R☆43Updated last week
- MEGAnE☆30Updated last year
- ☆25Updated last year
- Liftover VCF files☆18Updated 8 years ago
- Scripts to convert between file formats for various analyses☆16Updated last month
- tutorial on pggb☆34Updated 4 months ago
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆36Updated 2 months ago
- A tutorial on structural variant calling for short read sequencing data☆38Updated 7 months ago