shilab / STICI
STICI source code
☆17Updated 3 weeks ago
Alternatives and similar repositories for STICI:
Users that are interested in STICI are comparing it to the libraries listed below
- R-package: Calculation of haplotype blocks and libraries☆30Updated last month
- Haplotype and population structure inference using neural networks.☆27Updated 3 months ago
- Genealogical Estimation of Variant Age (GEVA)☆28Updated 3 years ago
- Evaluation of phasing performance☆22Updated 7 years ago
- ☆23Updated last year
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆57Updated 4 months ago
- SparsePainter: fast, accurate and fine-scale chromosome painting software based on PBWT and HashMap☆12Updated last week
- Genome-wide scan for balancing selection using beta statistic☆28Updated last year
- R code to compute the Singleton Density Score (SDS)☆28Updated 8 years ago
- ARG-based inference of selection using deep learning☆18Updated last year
- A tool for phasing and imputing haplotypes in 10k+ low coverage sequencing samples☆10Updated 4 years ago
- Here we present a method to plot the outputs of RFMIX version 2☆23Updated 7 months ago
- Sweep Inference Framework (controlling for correlation)☆29Updated 8 months ago
- A set of tools for modelling ancestry patterns along the genome.☆22Updated 2 months ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- Fast inference of fine-scale recombination rates based on fused-LASSO☆49Updated this week
- Repository for pipeline code☆24Updated last year
- Large scale ancestry inference from PCA data☆21Updated last year
- ☆20Updated 4 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- Tutorial on using popular tools for learning about population history☆49Updated 6 years ago
- Efficient Local Ancestry Inference☆13Updated last year
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆35Updated last week
- Flexible Genotyping of Polyploids using Next Generation Sequencing Data☆29Updated 5 months ago
- Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)☆22Updated 3 months ago
- Evolutionary Transcriptomics with R☆42Updated this week
- Likelihood-based Selective Sweep Detection☆37Updated last year
- predicting DFE and alpha from polymorphism data☆28Updated 6 years ago
- Tools to convert to and from vcf format☆14Updated 7 years ago
- Tools for inference of the DFE with dadi☆14Updated 3 years ago