YingZhou001 / IBDkin
IBD based kinship estimation
☆14Updated last year
Alternatives and similar repositories for IBDkin:
Users that are interested in IBDkin are comparing it to the libraries listed below
- ☆11Updated last year
- Immuological gene typing and annotation for genome assembly☆31Updated 3 months ago
- Evaluation of phasing performance☆22Updated 6 years ago
- heuristics to merge structural variant calls in VCF format.☆35Updated 8 years ago
- Structural variant merging tool☆49Updated 4 months ago
- A variant caller for the GBA gene using WGS data☆21Updated 5 months ago
- Scripts for analyses and figures for SNP STR Imputation manuscript☆12Updated 6 years ago
- FINSURF is a tool designed to analyse lists of sequences variants in the human genome.☆12Updated 2 years ago
- Plot CNV data with a genome viewer in R☆15Updated 7 years ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- Detection and genotyping of structural variants☆18Updated 2 months ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆21Updated 7 years ago
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆28Updated 3 years ago
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆18Updated last year
- A simple script to create a customizable html file from an AnnotSV output.☆18Updated 8 months ago
- Enabling differential allele-specific analysis☆11Updated 3 weeks ago
- Population-wide Deletion Calling☆35Updated 4 months ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆34Updated 6 months ago
- Structural Variant Prediction Viewer☆33Updated 7 years ago
- Liftover VCF files☆17Updated 8 years ago
- Computes various SV statistics☆14Updated last year
- VCF files of SVs using long-read sequencing (LRS).☆21Updated 3 years ago
- Haplotype and population structure inference using neural networks.☆27Updated last month
- Tools for processing and analyzing structural variants.☆32Updated 9 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- ☆21Updated last month
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆24Updated 9 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆21Updated 5 years ago