Alternatives and similar repositories for IBDkin

Users that are interested in IBDkin are comparing it to the libraries listed below

• DecodeGenetics / popSTR
  PopSTR - A Population based microsatellite genotyper
  ☆33Updated last year
• dantaki / CNVplot
  Plot CNV data with a genome viewer in R
  ☆15Updated 8 years ago
• DecodeGenetics / svimmer
  Structural variant merging tool
  ☆50Updated 9 months ago
• yukt / MetaMinimac2
  ☆11Updated 2 years ago
• ywchoi / phasing
  Evaluation of phasing performance
  ☆23Updated 7 years ago
• hmgu-itg / VCF-liftover
  Liftover VCF files
  ☆18Updated 8 years ago
• Illumina / Gauchian
  A variant caller for the GBA gene using WGS data
  ☆22Updated 10 months ago
• hall-lab / sv-pipeline
  Pipeline for structural variation detection in cohorts
  ☆49Updated 3 years ago
• zeeev / mergeSVcallers
  heuristics to merge structural variant calls in VCF format.
  ☆36Updated 8 years ago
• dellytools / svprops
  Computes various SV statistics
  ☆14Updated last year
• mobidic / knotAnnotSV
  A simple script to create a customizable html file from an AnnotSV output.
  ☆18Updated last year
• oscarlr / MsPAC
  Phase reads, assemble haplotypes and detect SVs
  ☆19Updated 4 years ago
• gimelbrantlab / Qllelic
  Enabling differential allele-specific analysis
  ☆11Updated 5 months ago
• andrewSharo / StrVCTVRE
  StrVCTVRE, a structural variant classifier for exonic deletions and duplications
  ☆18Updated last year
• gymreklab / snpstr-imputation
  Scripts for analyses and figures for SNP STR Imputation manuscript
  ☆13Updated 6 years ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• yairf / SDS
  R code to compute the Singleton Density Score (SDS)
  ☆31Updated 8 years ago
• ljdursi / mergevcf
  Python package and routines for merging VCF files
  ☆29Updated 4 years ago
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆34Updated last week
• KolmogorovLab / minda
  ☆18Updated last month
• PacificBiosciences / pbfusion
  ☆22Updated 2 weeks ago
• CAST-genomics / haptools
  Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis
  ☆24Updated 2 months ago
• monarch-initiative / SvAnna
  Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing
  ☆37Updated 11 months ago
• cortes-ciriano-lab / ReConPlot
  ☆22Updated 5 months ago
• talkowski-lab / svtk
  ☆35Updated 4 years ago
• DecodeGenetics / LRS_SV_sets
  VCF files of SVs using long-read sequencing (LRS).
  ☆22Updated 3 years ago
• HipSTR-Tool / HipSTR
  Genotype and phase short tandem repeats using Illumina whole-genome sequencing data
  ☆32Updated 4 years ago
• fakedrtom / SVAFotate
  ☆40Updated 8 months ago
• fritzsedlazeck / SVCollector
  Method to optimally select samples for validation and resequencing
  ☆27Updated 4 years ago
• YingZhou001 / Immuannot
  Immuological gene typing and annotation for genome assembly
  ☆37Updated 2 months ago