friedue / course_RNA-seq2015Links
☆14Updated 9 years ago
Alternatives and similar repositories for course_RNA-seq2015
Users that are interested in course_RNA-seq2015 are comparing it to the libraries listed below
Sorting:
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆23Updated 6 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆47Updated 3 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens☆30Updated 6 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 7 years ago
- Normalization for single cell RNA-seq data☆49Updated 5 months ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 3 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated last year
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- A suite for the analysis of CLIP-Seq datasets.☆12Updated 3 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- Differential ATAC-seq toolkit☆27Updated last year
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- Python wrapper around the popular ChIP-Seq peak caller SICER☆15Updated 7 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆40Updated last year
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 2 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆30Updated last year
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.☆70Updated 4 years ago
- ☆24Updated 7 years ago
- A python tool to do comparative analysis of mulitple single cell datasets.☆21Updated 6 years ago
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆50Updated last year