Alternatives and similar repositories for jackstraw:

Users that are interested in jackstraw are comparing it to the libraries listed below

• MarioniLab / Deconvolution2016
  Code and manuscript files for Aaron and Karsten's deconvolution paper.
  ☆16Updated 6 years ago
• yanwu2014 / swne
  Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets
  ☆105Updated last year
• SaskiaFreytag / cluster_benchmarking_code
  ☆16Updated 6 years ago
• LTLA / SingleCellThoughts
  Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.
  ☆44Updated 4 years ago
• lmweber / diffcyt
  R package for differential discovery analyses in high-dimensional cytometry data
  ☆20Updated last month
• jessemzhang / tn_test
  post-clustering differential expression test
  ☆35Updated 5 years ago
• Teichlab / cellity
  ☆37Updated 8 years ago
• anna-neufeld / countsplit
  ☆20Updated last year
• skinnider / dismay
  Calculation of distance metrics for matrices
  ☆25Updated 6 years ago
• milescsmith / ReductionWrappers
  R wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)
  ☆37Updated 2 months ago
• jokergoo / cola
  A General Framework for Consensus Partitioning
  ☆61Updated last month
• quon-titative-biology / scAlign
  A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…
  ☆37Updated 3 years ago
• xzhoulab / DRComparison
  Comparison of dimensionality reduction methods
  ☆30Updated 4 years ago
• drighelli / SpatialExperiment
  ☆59Updated 8 months ago
• epurdom / clusterExperiment
  R package of techniques for comparing clusterings of single-cell sequencing data
  ☆39Updated 10 months ago
• jingshuw / descend
  ☆16Updated 3 years ago
• czbiohub-sf / tabula-muris-vignettes
  Examples analyses using the single-cell RNA-seq data from mouse cell atlases
  ☆23Updated 5 years ago
• KlugerLab / t-SNE-Heatmaps
  Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq
  ☆48Updated 6 years ago
• SpatialTranscriptomicsResearch / st_viewer
  A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets
  ☆13Updated 3 years ago
• igrabski / scRNAseq-cell-type
  Probabilistic gene expression barcodes for cell type annotation
  ☆25Updated 2 years ago
• theislab / pseudodynamics
  Dynamic models for single-cell RNA-seq time series.
  ☆40Updated 6 years ago
• theMILOlab / SPATA
  SPATA Package for spatial gene expression analysis
  ☆22Updated 2 years ago
• Shians / CellBench
  R package for benchmarking single cell analysis methods
  ☆31Updated last year
• pachterlab / SpatialFeatureExperiment
  Extension of SpatialExperiment with sf
  ☆49Updated last month
• KChen-lab / SCMER
  Marker Selection by matching manifolds and elastic net
  ☆23Updated 4 months ago
• mojaveazure / loomR
  An R-based interface for loom files
  ☆66Updated 4 years ago
• CHPGenetics / GMM-Demux
  ☆14Updated last year
• greenelab / CZI-Latent-Assessment
  Supplement to the report in https://greenelab.github.io/czi-hca-report/
  ☆9Updated 6 years ago
• bioFAM / slalom
  ☆28Updated 2 years ago
• randel / MIND
  Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution
  ☆44Updated last year