ncchung / jackstrawLinks
Statistical Inference for Unsupervised Learning
☆16Updated last year
Alternatives and similar repositories for jackstraw
Users that are interested in jackstraw are comparing it to the libraries listed below
Sorting:
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆107Updated 2 years ago
- post-clustering differential expression test☆36Updated 6 years ago
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Updated 7 years ago
- R wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)☆36Updated last year
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆15Updated 4 years ago
- Single cell network synthesis toolkit☆23Updated 4 years ago
- Multi-omics studies are available here☆52Updated 3 years ago
- Comparison of dimensionality reduction methods☆30Updated 5 years ago
- ☆21Updated 2 years ago
- ☆18Updated last year
- R package for differential discovery analyses in high-dimensional cytometry data☆22Updated last year
- Code and manuscript files for Aaron and Karsten's deconvolution paper.☆16Updated 7 years ago
- ☆16Updated 7 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆38Updated 4 years ago
- A study to compare methods for clustering of scRNA-seq data☆45Updated last year
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆23Updated last year
- Volume-regularized NMF☆18Updated 3 years ago
- Inference of switch-like differential expression along single-cell trajectories☆22Updated 8 years ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆47Updated 2 years ago
- ☆71Updated 8 months ago
- A statistical simulator for rational scRNA-seq experimental design☆12Updated 5 years ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆22Updated 6 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- Extension of SpatialExperiment with sf☆57Updated 3 weeks ago
- Single-cell Hierarchical Poisson Factorization☆74Updated 3 years ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆47Updated 4 months ago
- A set of tools supporting the development, execution, and benchmarking of trajectory inference methods. 🌍☆77Updated 4 years ago
- Predict cell cycle phase in a continuum from single-cell RNA-seq data☆12Updated 5 years ago
- consistent quantification of external RNA-seq data sets☆58Updated 2 years ago
- Linseed: LINear Subspace identification for gene Expresion Deconvolution☆33Updated 5 months ago