songlab / chanceLinks
Download binary executables and sample data here:
☆18Updated 8 years ago
Alternatives and similar repositories for chance
Users that are interested in chance are comparing it to the libraries listed below
Sorting:
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- Enriched Domain Detector for ChIP-seq data☆16Updated 2 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- Published methods☆15Updated 8 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 6 months ago
- Chromatin segmentation in R☆19Updated 7 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- chia pet analysis software☆25Updated 6 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- Q ChIP-seq peak caller☆18Updated 10 months ago
- Python wrapper around the popular ChIP-Seq peak caller SICER☆15Updated 7 years ago
- a set of NGS pipelines☆24Updated last week
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 10 months ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- ☆12Updated 5 years ago
- ☆25Updated this week
- Differential ATAC-seq toolkit☆27Updated last year
- DriverPower☆26Updated 4 months ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 3 years ago
- ☆20Updated 8 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 3 weeks ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 3 years ago
- R package to detect splicing QTLs (sQTLs)☆15Updated 4 years ago