Download binary executables and sample data here:
☆18Oct 28, 2016Updated 10 years ago
Alternatives and similar repositories for chance
Users that are interested in chance are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Wrappers around NGS peak callers to both call peaks and run IDR☆11Aug 2, 2013Updated 13 years ago
- Enriched Domain Detector for ChIP-seq data☆16Aug 17, 2022Updated 4 years ago
- Chromatin segmentation in R☆19Feb 4, 2018Updated 8 years ago
- Peakzilla is a self-learning algorithm to identify transcription factor binding sites from ChIP-seq data. I would be very happy if you tr…☆21Aug 18, 2025Updated last year
- MUltiScale enrIchment Calling for ChIP-Seq Datasets☆23Mar 14, 2019Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Q ChIP-seq peak caller☆18Jul 17, 2024Updated 2 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11May 21, 2026Updated 5 months ago
- NGS perl modules☆10Updated this week
- Differential analysis for ChIP-seq with biological replicates☆35Jan 5, 2022Updated 4 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Jul 6, 2021Updated 5 years ago
- Rcount: simple and flexible RNA-Seq read counting☆12May 19, 2022Updated 4 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Nov 21, 2018Updated 7 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆18Nov 26, 2019Updated 6 years ago
- Python wrapper around the popular ChIP-Seq peak caller SICER☆15Dec 7, 2017Updated 8 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A tool for Read Multi-Mapper Resolution☆25Feb 15, 2017Updated 9 years ago
- ☆11Dec 3, 2013Updated 12 years ago
- Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumors☆14Jul 10, 2019Updated 7 years ago
- Ritornello is a high fidelity control free ChIP-seq peak calling algorithm☆13Aug 23, 2018Updated 8 years ago
- Romulus: Robust multi-state identification of transcription factor binding sites from DNase-seq data☆10Mar 6, 2019Updated 7 years ago
- A Modern Perl Framework for High Throughput Sequencing analysis☆17May 6, 2020Updated 6 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆26Dec 11, 2017Updated 8 years ago
- ☆13Apr 14, 2026Updated 6 months ago
- A versatile and efficient RNA-Seq read counting tool☆16Mar 30, 2016Updated 10 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.☆16Apr 12, 2014Updated 12 years ago
- Next generation sequencing (NGS/HTS) tools.☆19Jan 25, 2024Updated 2 years ago
- Compressive Read-mapping Accelerator☆14Sep 7, 2016Updated 10 years ago
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Jun 23, 2016Updated 10 years ago
- An alignment tool for optical mapping data☆10May 29, 2020Updated 6 years ago
- Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data☆34Jul 14, 2017Updated 9 years ago
- Applying IDR analysis to Homer peaks.☆20May 8, 2020Updated 6 years ago
- R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…☆11Apr 19, 2016Updated 10 years ago
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Mar 1, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Tutorial with snakemake and Scientific Filesystem☆16Nov 11, 2020Updated 5 years ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Apr 12, 2024Updated 2 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Feb 20, 2018Updated 8 years ago
- This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).☆15May 9, 2019Updated 7 years ago
- A deletion finder through re-aligning the whole soft-clipping read☆12Jul 2, 2016Updated 10 years ago
- Spliced alignment evaluation software☆13Oct 28, 2013Updated 13 years ago
- Processing and analysis of data coming from Illumina sequencing machines☆11Oct 13, 2026Updated 2 weeks ago