Alternatives and similar repositories for boiler:

Users that are interested in boiler are comparing it to the libraries listed below

• BenLangmead / qtip
  Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities
  ☆25Updated 5 years ago
• cdarby / samovar
  Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters
  ☆24Updated 6 years ago
• nellore / runs
  Scripts for reproducing analyses of large RNA-seq datasets
  ☆15Updated 5 years ago
• bioturing / hera-t
  Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol
  ☆17Updated 3 years ago
• hbc / NGS-Data-Analysis-long-course
  ☆11Updated 7 years ago
• bioforensics / rsidx
  Library for indexing VCF files for random access searches by rsID
  ☆17Updated last year
• cbare / vcf2maf
  Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)
  ☆14Updated 8 years ago
• hammerlab / bai-indexer
  Build an index for your BAM Index (BAI)
  ☆17Updated 10 years ago
• statOmics / stageR
  stageR package
  ☆11Updated 2 years ago
• lkuchenb / MultiHLA
  WES HLA Typing based on multiple alternative tools
  ☆15Updated 4 years ago
• medvedevgroup / varmatch
  robust matching of small variant datasets using flexible scoring schemes
  ☆10Updated 5 years ago
• mikelove / alpine
  Modeling and correcting fragment sequence bias for RNA-seq
  ☆24Updated 11 months ago
• kundajelab / training_camp
  Genetics training camp
  ☆21Updated 4 years ago
• quinlan-lab / pathoscore
  pathoscore evaluates variant pathogenicity tools and scores.
  ☆21Updated 3 years ago
• nellore / intropolis
  Exon-exon splice junctions across SRA
  ☆40Updated 3 years ago
• quinlan-lab / ccr
  Building the constrained coding regions (CCR) model
  ☆16Updated 6 years ago
• brentp / python-giggle
  python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.
  ☆16Updated 7 years ago
• loosolab / UROPA
  Universal RObust Peak Annotator
  ☆16Updated last year
• roryk / bcbio.rnaseq
  Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …
  ☆24Updated 7 years ago
• sentisci / fheatmap
  R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…
  ☆11Updated 9 years ago
• staciawyman / blender
  This BLENDER has been sunsetted
  ☆16Updated 7 months ago
• bioinfologics / sdg
  Sequence Distance Graph framework: graph + reads + mapping + analysis
  ☆25Updated 2 years ago
• marcos-diazg / musica
  MuSiCa - Mutational Signatures in Cancer
  ☆23Updated last year
• aboyle / F-seq
  A Feature Density Estimator for High-Throughput Sequence Tags
  ☆23Updated 3 years ago
• tengmx / rnaseqcomp
  Benchmarks for RNA-seq quantification pipelines
  ☆8Updated 5 years ago
• casanova-lab / NHC
  NHC: A computational approach to detect physiological homogeneity in the midst of genetic heterogeneity
  ☆10Updated last year
• your-highness / normR
  Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.
  ☆11Updated 3 years ago
• uio-cels / genomicgraphcoords
  Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes
  ☆11Updated 8 years ago
• hwanglab / divine
  Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data
  ☆13Updated 6 years ago
• LiuBioinfo / SeqOthello
  SeqOthello supports fast coverage query and containment query.
  ☆12Updated 5 years ago