Alternatives and similar repositories for SNT

Users that are interested in SNT are comparing it to the libraries listed below

• clij / clij-docs
  Online documentation and reference for CLIJ
  ☆28Updated 4 years ago
• saalfeldlab / stitching-spark
  Reconstruct big images from overlapping tiled images on a Spark cluster.
  ☆34Updated last year
• cmongis / psfj
  PSFj - Know your microscope fluorescence
  ☆21Updated 5 years ago
• clij / clij
  CLIJ is deprecated. Visit CLIJ2
  ☆56Updated 3 years ago
• bigdataviewer / bigdataviewer-playground
  ☆20Updated 2 months ago
• piximi / piximi_old
  a free, open-source web app for annotating, training, and evaluating image understanding algorithms
  ☆25Updated 3 years ago
• MouseLand / receptivefield-explorer
  GUI to compute and explore receptive fields, primarily from calcium imaging recordings
  ☆13Updated 3 years ago
• pylattice / pyLattice
  A python library for advanced lattice light-sheet image analysis
  ☆21Updated 4 years ago
• BIOP / EasyXT-FIJI
  Commands and Classes for interfacing between Imaris and Fiji
  ☆12Updated 8 months ago
• AllenInstitute / aics-segmentation
  AICS Segmentation (One-Way) Mirror
  ☆45Updated 4 years ago
• haesleinhuepf / napari-simpleitk-image-processing
  Process images using SimpleITK in napari
  ☆21Updated last month
• DanuserLab / u-shape3D
  Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…
  ☆29Updated last month
• JaneliaSciComp / multifish
  EASI-FISH analysis pipeline for spatial transcriptomics
  ☆35Updated 6 months ago
• sverger / SurfCut
  Fiji macro for cutting confocal stacks at various depths relative to surface signal
  ☆10Updated 4 years ago
• PolusAI / nyxus
  A fully scalable robust image feature extraction library.
  ☆24Updated this week
• funkelab / daisy
  Block-wise task scheduling for large nD volumes.
  ☆30Updated 2 months ago
• ABIF-McGill / MethodsJ2
  MethodsJ2
  ☆14Updated 3 years ago
• sofroniewn / napari-training-course
  Lectures for a napari training course
  ☆50Updated last year
• SystemsResearch / CUBIC_nprot
  Code for the image processing and analysis described our Nature Protocols paper.
  ☆10Updated 9 years ago
• imglib / imglyb
  Connecting Java/ImgLib2 + Python/NumPy
  ☆30Updated last month
• BICCN / cell-locator
  manually align specimens to annotated 3D spaces
  ☆19Updated 2 years ago
• bigdataprocessor / bigdataprocessor2
  ☆20Updated 4 months ago
• nvladimus / npy2bdv
  Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.
  ☆35Updated 9 months ago
• hinderling / napari_pixel_classifier
  An Ilastik-like interactive pixel classifier.
  ☆16Updated 9 months ago
• biovoxxel / bv3dbox
  The known BioVoxxel Toolbox functions now improved for 2D and 3D images
  ☆17Updated last month
• mobie / mobie-viewer-fiji
  ☆36Updated this week
• HenriquesLab / NanoJ-Core
  Core functionality of NanoJ
  ☆16Updated last year
• JaneliaSciComp / BigStitcher-Spark
  Running compute-intense parts of BigStitcher distributed
  ☆26Updated last week
• brainglobe / cellfinder-napari
  Efficient cell detection in large images using cellfinder in napari
  ☆23Updated last year
• constantinpape / pybdv
  python tools for BigDataViewer
  ☆22Updated 5 months ago