Alternatives and similar repositories for SNT

Users that are interested in SNT are comparing it to the libraries listed below

• ClearVolume / imglib2-clearvolume
  ImgLib2 integration for ClearVolume
  ☆12Updated 11 months ago
• sofroniewn / napari-training-course
  Lectures for a napari training course
  ☆50Updated 2 years ago
• BIOP / EasyXT-FIJI
  Commands and Classes for interfacing between Imaris and Fiji
  ☆13Updated last year
• clij / clij
  CLIJ is deprecated. Visit CLIJ2
  ☆56Updated 4 years ago
• UU-cellbiology / ZstackDepthColorCode
  Z-stack Depth Colorcode ImageJ FIJI plugin
  ☆25Updated 3 months ago
• AllenInstitute / aics-segmentation
  AICS Segmentation (One-Way) Mirror
  ☆45Updated 5 years ago
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆92Updated last week
• tlambert03 / pycudadecon
  Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy
  ☆71Updated last week
• morphonets / SNT
  The framework for quantification of neuronal anatomy
  ☆55Updated this week
• ariel-waisman / LabelsToROIs
  A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification
  ☆23Updated 4 years ago
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆46Updated 2 months ago
• lens-biophotonics / dcimg
  A Python module for accessing Hamamatsu DCIMG files
  ☆14Updated 2 years ago
• guiwitz / naparimovie
  Create movies from series of key-frames in napari.
  ☆38Updated 4 years ago
• hammerlab / flowdec
  TensorFlow Deconvolution for Microscopy Data
  ☆91Updated 3 years ago
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆53Updated 5 years ago
• lowe-lab-ucl / arboretum
  Track and lineage visualization with btrack and Napari
  ☆45Updated 4 months ago
• tferr / Scripts
  Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ
  ☆25Updated 3 years ago
• clij / clij-docs
  Online documentation and reference for CLIJ
  ☆28Updated 4 years ago
• JaneliaMLCourse / JaneliaMLCourse
  ☆20Updated 7 years ago
• saalfeldlab / stitching-spark
  Reconstruct big images from overlapping tiled images on a Spark cluster.
  ☆34Updated 2 years ago
• SWC-Advanced-Microscopy / StitchIt
  Stitching of large tiled datasets
  ☆21Updated 10 months ago
• BIOP / ijp-LaRoMe
  some useful function to get Label from ROIs and vice versa , and more!
  ☆11Updated 2 years ago
• maurosilber / SMO
  Robust and unbiased estimation of the background distribution for fluorescence microscopy.
  ☆13Updated 3 months ago
• haesleinhuepf / imagejmacromarkdown
  Generate markdown notebooks from ImageJ Macro
  ☆26Updated 4 years ago
• chanzuckerberg / napari-plugin-alfa-cohort
  Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration
  ☆11Updated 4 years ago
• hinderling / napari_pixel_classifier
  An Ilastik-like interactive pixel classifier.
  ☆16Updated last year
• pylattice / pyLattice
  A python library for advanced lattice light-sheet image analysis
  ☆21Updated 5 years ago
• JaneliaSciComp / multifish
  EASI-FISH analysis pipeline for spatial transcriptomics
  ☆35Updated last year
• RMS-DAIM / Python-for-Bioimage-Analysis
  This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…
  ☆135Updated 5 years ago
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆90Updated 2 weeks ago