Annotation Extraction Genomic Integration Suite (AEGIS) is a powerful and flexible Python-based suite for the manipulation, analysis, and integration of genomic annotations. It is based on a robust object-orientated framework. Available in PyPI, Docker Hub and as a Github container in GHRC.
☆15Oct 21, 2026Updated this week
Alternatives and similar repositories for aegis
Users that are interested in aegis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Phylogenomic species tree inference under gene duplication and loss☆13Sep 20, 2026Updated last month
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆25Sep 25, 2026Updated last month
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆25Updated this week
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆38Apr 20, 2026Updated 6 months ago
- Deep Learning Framework for Transposable Element Discovery and Annotation☆12Aug 18, 2026Updated 2 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Dynamic Elongation of a Genome Assembly Path☆31Jul 27, 2026Updated 2 months ago
- Serial of Similarity Matrix for subgenome partition☆11Feb 6, 2025Updated last year
- Unsupervised Deep Gene Finding☆40Updated this week
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆12Dec 7, 2022Updated 3 years ago
- a gap-filling tools of genome in complex region.☆27Dec 30, 2025Updated 9 months ago
- PHasing Reads in Areas Of Homozygosity☆14Feb 12, 2025Updated last year
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Nov 25, 2024Updated last year
- Consensus genome annotation using OMA☆32Jan 14, 2026Updated 9 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A GUI tools for Gap closed based on assembly graph☆14Nov 4, 2025Updated 11 months ago
- A machine learning approach to alignment filtering☆17Jun 18, 2026Updated 4 months ago
- ☆11Oct 23, 2024Updated 2 years ago
- rnalib: a python-based transcriptomics library☆14Jul 27, 2026Updated 2 months ago
- A novel genome assembly pipeline based on deep learning☆71Dec 2, 2024Updated last year
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆63Jul 5, 2026Updated 3 months ago
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago
- Homologizer: phasing gene copies into polyploid subgenomes☆13Feb 3, 2026Updated 8 months ago
- Some components that speed up and reduce resource cost for original ALLHiC☆15Jun 21, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- tandemtwister: Tandem repeat genotyping tool☆23Feb 1, 2026Updated 8 months ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆67May 17, 2026Updated 5 months ago
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆26Mar 11, 2026Updated 7 months ago
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Oct 17, 2026Updated last week
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆23Jul 26, 2023Updated 3 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆32Jul 13, 2026Updated 3 months ago
- parallelLastz: Running Lastz in parallel☆18Sep 13, 2026Updated last month
- Improved long-read assembly by preserving contained reads☆29Aug 22, 2024Updated 2 years ago
- MitoDNA extending assembler from NGS data☆23Mar 19, 2026Updated 7 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆39Mar 5, 2023Updated 3 years ago
- Error correction of long reads☆16Jan 30, 2026Updated 8 months ago
- ☆15Aug 6, 2025Updated last year
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Mar 29, 2023Updated 3 years ago
- ☆29May 12, 2026Updated 5 months ago
- Taxon-aware analysis of clustered protein sequences☆31Jul 1, 2024Updated 2 years ago
- Panaln: Indexing pangenome for read alignment☆10Apr 16, 2025Updated last year