mfumagalli / ngsJuliaLinks
☆17Updated 8 months ago
Alternatives and similar repositories for ngsJulia
Users that are interested in ngsJulia are comparing it to the libraries listed below
Sorting:
- A Julia package for estimating phylogenetic networks from genomic data☆19Updated last year
- A Julia package for handle genome graph in the GFA format.☆11Updated 2 years ago
- ☆14Updated 5 months ago
- OpenMendel package for haplotyping and imputation☆25Updated this week
- K-mer counting algorithms and count-data utilities for the BioJulia framework☆11Updated 2 years ago
- Genome-wide association studies (GWAS) for ordered categorical phenotypes☆21Updated this week
- ☆12Updated 9 months ago
- Tutorial on Bayesian phylogenetic analysis☆46Updated 7 years ago
- ☆18Updated this week
- ☆19Updated 11 months ago
- Sampling and inference of genealogies with recombination☆29Updated 8 months ago
- Read and write VCF and BCF files☆13Updated last year
- Phylogenetic inference using Stan☆24Updated 3 months ago
- Display utilities for phylogenetic trees and networks☆16Updated 5 months ago
- TreeKnit is a package that infers Ancestral Reassortment Graphs for segmented genomes (typically, human influenza).☆13Updated 3 months ago
- Extra add-ons that may be useful for people using SLiM, but that are not part of the SLiM project itself☆42Updated last month
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆31Updated 3 years ago
- Cool Bioinformatics Scripts☆11Updated last year
- Analyzing RNA-Seq with approximate likelihood☆26Updated 4 years ago
- EM-PCA for Ultra-low Coverage Sequencing Data☆18Updated 4 months ago
- ☆11Updated 2 years ago
- Process linked-read data, from raw sequences to phased haplotypes, batteries included. Works with WGS too!☆16Updated last week
- A comparative genomics workflow using Nextflow, conda, Julia and R☆44Updated last year
- Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.☆19Updated 8 months ago
- A course in the theory and practice of phylogenetic inference from DNA sequence data☆28Updated last month
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆14Updated last year
- Infer the age of ancestral nodes in a tree sequence.☆21Updated 2 months ago
- ☆26Updated 4 years ago
- Explore ploidy levels from NGS data alone☆40Updated 2 years ago
- Phylogenetic ANalyses of DiversificAtion (in Julia)☆12Updated 10 months ago