Alternatives and similar repositories for SIMLR

Users that are interested in SIMLR are comparing it to the libraries listed below

• Vivianstats / scImpute
  Accurate and robust imputation of scRNA-seq data
  ☆97Updated 6 years ago
• epierson9 / ZIFA
  Zero-inflated dimensionality reduction algorithm for single-cell data
  ☆110Updated 5 years ago
• mohuangx / SAVER
  Single-cell RNA-seq Gene Expression Recovery
  ☆111Updated 9 months ago
• klarman-cell-observatory / scPhere
  ☆102Updated 2 years ago
• LuyiTian / sc_mixology
  This contains the dataset for comparing scRNA-seq analysis methods
  ☆91Updated 5 years ago
• ushaham / BatchEffectRemoval
  ☆56Updated 5 years ago
• PMBio / scLVM
  scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…
  ☆108Updated 2 years ago
• 10XGenomics / single-cell-3prime-paper
  ☆85Updated 5 years ago
• hemberg-lab / SC3
  A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments
  ☆128Updated 4 years ago
• campbio / celda
  Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data
  ☆151Updated 7 months ago
• asncd / MIMOSCA
  A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.
  ☆95Updated 6 years ago
• aertslab / cisTopic
  cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data
  ☆142Updated last year
• simslab / scHPF
  Single-cell Hierarchical Poisson Factorization
  ☆73Updated 3 years ago
• AltschulerWu-Lab / scScope
  ☆48Updated 6 years ago
• sandhya212 / BISCUIT_SingleCell_IMM_ICML_2016
  R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.
  ☆66Updated 7 years ago
• csoneson / conquer_comparison
  Code for evaluation of differential expression methods in single-cell RNA-seq data
  ☆112Updated 5 years ago
• jacoblevine / PhenoGraph
  Subpopulation detection in high-dimensional single-cell data
  ☆137Updated 4 years ago
• hemberg-lab / scRNA.seq.datasets
  Collection of public scRNA-Seq datasets used by our group
  ☆173Updated 4 years ago
• AllonKleinLab / SPRING
  ☆69Updated 7 years ago
• eleozzr / desc
  Deep Embedding for Single-cell Clustering
  ☆88Updated last year
• hms-dbmi / scde
  R package for analyzing single-cell RNA-seq data
  ☆176Updated last year
• linnarsson-lab / BackSPIN
  Biclustering algorithm
  ☆57Updated 7 years ago
• kharchenkolab / conos
  R package for the joint analysis of multiple single-cell RNA-seq datasets
  ☆214Updated last year
• iaconogi / bigSCale2
  Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data
  ☆105Updated 2 years ago
• MarioniLab / MNN2017
  Code for the MNN manuscript figures
  ☆50Updated 6 years ago
• lanagarmire / NMFEM
  ☆16Updated 8 years ago
• bioFAM / MOFA
  Multi-Omics Factor Analysis
  ☆249Updated 4 years ago
• favilaco / deconv_benchmark
  ☆58Updated 4 years ago
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆89Updated 10 months ago
• KrishnaswamyLab / scprep
  A collection of scripts and tools for loading, processing, and handling single cell data.
  ☆74Updated this week