BatzoglouLabSU / SIMLR
Implementations in both Matlab and R of the SIMLR method. The manuscript of the method is available at: https://www.nature.com/articles/nmeth.4207
☆111Updated 4 months ago
Alternatives and similar repositories for SIMLR:
Users that are interested in SIMLR are comparing it to the libraries listed below
- Accurate and robust imputation of scRNA-seq data☆95Updated 5 years ago
- Zero-inflated dimensionality reduction algorithm for single-cell data☆108Updated 4 years ago
- ☆98Updated last year
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆105Updated 2 years ago
- ☆55Updated 4 years ago
- Single-cell Hierarchical Poisson Factorization☆68Updated 2 years ago
- R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.☆65Updated 6 years ago
- This contains the dataset for comparing scRNA-seq analysis methods☆90Updated 4 years ago
- Single-cell RNA-seq Gene Expression Recovery☆110Updated 3 months ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆204Updated last year
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆147Updated 2 weeks ago
- Variational autoencoder for single cell RNA-seq datasets☆44Updated 7 years ago
- A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments☆122Updated 3 years ago
- Biclustering algorithm☆56Updated 7 years ago
- Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)☆37Updated 4 months ago
- ☆49Updated 5 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆74Updated last year
- ☆65Updated last year
- ☆67Updated 6 years ago
- ☆84Updated 4 years ago
- Signature Analysis and Visualization for Single-Cell RNA-seq☆165Updated 8 months ago
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆102Updated last year
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 6 years ago
- R package for analyzing single-cell RNA-seq data☆173Updated last year
- ☆98Updated 5 months ago
- Code for the MNN manuscript figures☆51Updated 6 years ago
- Collection of public scRNA-Seq datasets used by our group☆168Updated 3 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆87Updated 5 years ago
- Detect doublets in single-cell RNA-seq data☆85Updated 5 years ago