Alternatives and similar repositories for SIMLR:

Users that are interested in SIMLR are comparing it to the libraries listed below

• Vivianstats / scImpute
  Accurate and robust imputation of scRNA-seq data
  ☆95Updated 5 years ago
• epierson9 / ZIFA
  Zero-inflated dimensionality reduction algorithm for single-cell data
  ☆109Updated 4 years ago
• wang-research / VASC
  Variational autoencoder for single cell RNA-seq datasets
  ☆44Updated 7 years ago
• mohuangx / SAVER
  Single-cell RNA-seq Gene Expression Recovery
  ☆110Updated 5 months ago
• klarman-cell-observatory / scPhere
  ☆100Updated 2 years ago
• LuyiTian / sc_mixology
  This contains the dataset for comparing scRNA-seq analysis methods
  ☆92Updated 4 years ago
• campbio / celda
  Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data
  ☆147Updated 2 months ago
• PMBio / scLVM
  scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…
  ☆106Updated 2 years ago
• linnarsson-lab / BackSPIN
  Biclustering algorithm
  ☆56Updated 7 years ago
• aertslab / cisTopic
  cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data
  ☆139Updated last year
• hemberg-lab / SC3
  A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments
  ☆125Updated 3 years ago
• sandhya212 / BISCUIT_SingleCell_IMM_ICML_2016
  R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.
  ☆66Updated 7 years ago
• AllonKleinLab / SPRING
  ☆68Updated 7 years ago
• KrishnaswamyLab / SingleCellWorkshop
  ☆90Updated 4 years ago
• KrishnaswamyLab / phateR
  PHATE dimensionality reduction method implemented in R
  ☆79Updated 4 years ago
• simslab / scHPF
  Single-cell Hierarchical Poisson Factorization
  ☆69Updated 2 years ago
• csoneson / conquer_comparison
  Code for evaluation of differential expression methods in single-cell RNA-seq data
  ☆112Updated 4 years ago
• kharchenkolab / conos
  R package for the joint analysis of multiple single-cell RNA-seq datasets
  ☆211Updated last year
• ushaham / BatchEffectRemoval
  ☆55Updated 5 years ago
• hms-dbmi / scde
  R package for analyzing single-cell RNA-seq data
  ☆175Updated last year
• iaconogi / bigSCale2
  Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data
  ☆103Updated last year
• AltschulerWu-Lab / scScope
  ☆49Updated 5 years ago
• davismcc / archive-scater
  An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.
  ☆64Updated 7 years ago
• catavallejos / BASiCS
  BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/pa…
  ☆83Updated last week
• 10XGenomics / single-cell-3prime-paper
  ☆85Updated 4 years ago
• cantinilab / momix-notebook
  ☆65Updated last year
• FertigLab / CoGAPS
  Bayesian MCMC matrix factorization algorithm
  ☆69Updated this week
• hakyimlab / PrediXcan
  PrediXcan Project
  ☆110Updated 2 years ago
• YosefLab / scone
  ☆53Updated 2 months ago
• Oshlack / splatter
  Simple simulation of single-cell RNA sequencing data
  ☆226Updated 3 weeks ago