BatzoglouLabSU / SIMLRLinks
Implementations in both Matlab and R of the SIMLR method. The manuscript of the method is available at: https://www.nature.com/articles/nmeth.4207
☆111Updated 2 months ago
Alternatives and similar repositories for SIMLR
Users that are interested in SIMLR are comparing it to the libraries listed below
Sorting:
- Zero-inflated dimensionality reduction algorithm for single-cell data☆110Updated 5 years ago
- Accurate and robust imputation of scRNA-seq data☆95Updated 5 years ago
- ☆56Updated 5 years ago
- This contains the dataset for comparing scRNA-seq analysis methods☆91Updated 4 years ago
- ☆100Updated 2 years ago
- ☆85Updated 5 years ago
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆106Updated 2 years ago
- Single-cell Hierarchical Poisson Factorization☆70Updated 2 years ago
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆148Updated 5 months ago
- A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments☆127Updated 4 years ago
- Single-cell RNA-seq Gene Expression Recovery☆109Updated 7 months ago
- Multi-Omics Factor Analysis☆247Updated 4 years ago
- R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.☆66Updated 7 years ago
- Variational autoencoder for single cell RNA-seq datasets☆44Updated 7 years ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆91Updated 5 years ago
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆104Updated 2 years ago
- Deep Embedding for Single-cell Clustering☆87Updated last year
- ☆48Updated 6 years ago
- Collection of public scRNA-Seq datasets used by our group☆173Updated 4 years ago
- ☆67Updated last year
- R package for analyzing single-cell RNA-seq data☆175Updated last year
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆140Updated last year
- ☆68Updated 7 years ago
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 6 years ago
- Code for evaluation of differential expression methods in single-cell RNA-seq data☆112Updated 4 years ago
- HotNet2 is an algorithm for finding significantly altered subnetworks in a large gene interaction network☆102Updated 6 years ago
- Subpopulation detection in high-dimensional single-cell data☆138Updated 4 years ago
- Biclustering algorithm☆56Updated 7 years ago
- Code for the MNN manuscript figures☆50Updated 6 years ago
- ☆29Updated 2 years ago