xuebaliang / scziDeskLinks
Deep soft K-means clustering with self-training for single cell RNA sequence data
☆24Updated 4 years ago
Alternatives and similar repositories for scziDesk
Users that are interested in scziDesk are comparing it to the libraries listed below
Sorting:
- single-cell graph attentional clustering☆12Updated 3 years ago
- scDCC: Single Cell Deep Constrained Clustering☆40Updated 11 months ago
- ☆14Updated 4 years ago
- scGMAI: a Gaussian mixture model for clustering single-cell RNA-seq data based on deep autoencoder☆16Updated 4 years ago
- scDeepCluster for Single Cell RNA-seq data☆101Updated 11 months ago
- ☆18Updated 3 years ago
- single-cell graph autoencoder☆22Updated 3 years ago
- "ZINB-based Graph Embedding Autoencoder for Single-cell RNA-seq Interpretations" in AAAI 2022☆22Updated 2 years ago
- Pytorch implementation of scDeepCluster for Single Cell RNA-seq data☆32Updated 11 months ago
- ☆21Updated 3 years ago
- ☆33Updated 2 years ago
- Cell clustering for spatial transcriptomics data with graph neural network☆62Updated 2 years ago
- Code to reproduce results in Ravindra NG* & Sehanobish A* et al. 2020, "Disease State Prediction From Single-Cell Data Using Graph Attent…☆16Updated 5 years ago
- conST: an interpretable multi-modal contrastive learning framework for spatial transcriptomics☆26Updated last year
- Deep joint-leaning single-cell multi-omics model☆16Updated 2 years ago
- ☆13Updated last year
- a unified single-cell data integration framework by optimal transport☆35Updated 8 months ago
- scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks☆145Updated 10 months ago
- An offical repo for paper "Single-cells are Spatial Tokens: Transformers for Spatially Resolved Transcriptomics Data Imputation"☆17Updated last year
- scAce: an adaptive embedding and clustering method for scRNA-seq data☆11Updated last year
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆25Updated 2 years ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…☆57Updated last year
- Iterative transfer learning with neural network improves clustering and cell type classification in single-cell RNA-seq analysis☆54Updated 2 weeks ago
- Single-cell biological network inference using a heterogeneous graph transformer☆73Updated 4 months ago
- ☆19Updated last year
- Single-Cell Multimodal Prediction via Transformer☆28Updated last year
- CLEAR: Self-supervised contrastive learning for integrative single-cell RNA-seq data analysis☆33Updated 2 years ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆46Updated 2 years ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆73Updated 3 years ago
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆39Updated 2 years ago