Alternatives and similar repositories for scGMAI

Users that are interested in scGMAI are comparing it to the libraries listed below

• ciortanmadalina / contrastive-sc
  ☆14Updated 4 years ago
• ttgump / scDCC
  scDCC: Single Cell Deep Constrained Clustering
  ☆41Updated last year
• ttgump / scDeepCluster_pytorch
  Pytorch implementation of scDeepCluster for Single Cell RNA-seq data
  ☆33Updated last year
• ttgump / scDeepCluster
  scDeepCluster for Single Cell RNA-seq data
  ☆102Updated last year
• xuebaliang / scziDesk
  Deep soft K-means clustering with self-training for single cell RNA sequence data
  ☆25Updated 5 years ago
• cmzuo11 / scMVAE
  Deep joint-leaning single-cell multi-omics model
  ☆15Updated 3 years ago
• ciortanmadalina / graph-sc
  ☆18Updated 3 years ago
• caokai1073 / uniPort
  a unified single-cell data integration framework by optimal transport
  ☆35Updated last year
• Joye9285 / scGAC
  single-cell graph attentional clustering
  ☆14Updated 3 years ago
• zpliulab / GENELink
  ☆35Updated 3 years ago
• xiaoyeye / CCST
  Cell clustering for spatial transcriptomics data with graph neural network
  ☆63Updated 2 years ago
• Philyzh8 / scTAG
  "ZINB-based Graph Embedding Autoencoder for Single-cell RNA-seq Interpretations" in AAAI 2022
  ☆22Updated 2 years ago
• DHUDBlab / scDSC
  ☆23Updated 3 years ago
• juexinwang / scGNN
  scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks
  ☆151Updated last year
• HantaoShu / DeepSEM
  ☆85Updated 2 years ago
• OSU-BMBL / deepmaps
  Single-cell biological network inference using a heterogeneous graph transformer
  ☆76Updated 7 months ago
• jianhuupenn / ItClust
  Iterative transfer learning with neural network improves clustering and cell type classification in single-cell RNA-seq analysis
  ☆55Updated 4 months ago
• ChengF-Lab / autoCell
  ☆16Updated 3 years ago
• ZixiangLuo1161 / scGAE
  single-cell graph autoencoder
  ☆24Updated 3 years ago
• zhaofangyuan98 / SDMBench
  ☆41Updated last year
• kodaim1115 / scMM
  ☆18Updated 4 years ago
• QIFEIDKN / STAGATE
  Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics
  ☆48Updated 2 years ago
• JiangBioLab / DeepST
  Identify spatial domain
  ☆83Updated 4 months ago
• QIFEIDKN / STAGATE_pyG
  Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…
  ☆60Updated last year
• yuzhenmao / ScRAT
  Implementation of Phenotype prediction from single-cell RNA-seq data using attention-based neural networks (Bioinformatics 2024).
  ☆12Updated last year
• zhanglabtools / STAGATE
  Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics
  ☆75Updated 3 years ago
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆53Updated 3 years ago
• drieslab / spatial-datasets
  overview of spatial datasets
  ☆76Updated last year
• zhanglab-wbgcas / STGRNS
  ☆30Updated 2 years ago
• zhyu-lab / bmvae
  a variational autoencoder method for clustering single-cell mutation data
  ☆12Updated last year