Alternatives and similar repositories for Investigating-chromatin-biology-ChIPseq

Users that are interested in Investigating-chromatin-biology-ChIPseq are comparing it to the libraries listed below

• CebolaLab / ATAC-seq
  Analysis pipeline for ATAC-seq data
  ☆79Updated 2 years ago
• harvardinformatics / ATAC-seq
  ☆143Updated 6 years ago
• loosolab / TOBIAS
  Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal
  ☆231Updated 2 months ago
• reskejak / ATAC-seq
  Basic workflow for ATAC-seq analysis
  ☆90Updated last year
• hbctraining / Intro-to-bulk-RNAseq
  Introduction to bulk RNA-seq
  ☆123Updated 6 months ago
• crazyhottommy / scATACseq-analysis-notes
  my notes for scATACseq analysis
  ☆131Updated last year
• nf-core / atacseq
  ATAC-seq peak-calling and QC analysis pipeline
  ☆213Updated last week
• bli25 / RSEM_tutorial
  A short tutorial on how to use RSEM
  ☆139Updated 5 years ago
• erilu / bulk-rnaseq-analysis
  A complete guide for analyzing bulk RNA-seq data. Go from raw FASTQ files to mapping reads using STAR and differential gene expression an…
  ☆102Updated 5 years ago
• PoisonAlien / trackplot
  Generate IGV style locus tracks from bigWig files in R
  ☆173Updated last year
• CebolaLab / RNA-seq
  Step-by-step analysis pipeline for RNA-seq data
  ☆148Updated 2 years ago
• 10XGenomics / vartrix
  Single-Cell Genotyping Tool
  ☆212Updated 2 years ago
• FredHutch / SEACR
  SEACR: Sparse Enrichment Analysis for CUT&RUN
  ☆117Updated 2 years ago
• broadinstitute / ABC-Enhancer-Gene-Prediction
  Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)
  ☆239Updated 4 months ago
• huayc09 / SeuratExtend
  ☆188Updated last week
• hbctraining / Intro-to-DGE
  ☆209Updated 3 months ago
• cortes-ciriano-lab / SComatic
  A tool for detecting somatic variants in single cell data
  ☆215Updated last year
• JiekaiLab / scTE
  ☆112Updated last year
• mhammell-laboratory / TEtranscripts
  A package for including transposable elements in differential enrichment analysis of sequencing datasets.
  ☆267Updated last week
• jsh58 / Genrich
  Detecting sites of genomic enrichment
  ☆196Updated 2 years ago
• nf-core / cutandrun
  Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …
  ☆104Updated 3 weeks ago
• zhangyuqing / ComBat-seq
  Batch effect adjustment based on negative binomial regression for RNA sequencing count data
  ☆198Updated 5 years ago
• yupenghe / methylpy
  WGBS/NOMe-seq Data Processing & Differential Methylation Analysis
  ☆146Updated 2 years ago
• nloyfer / wgbs_tools
  tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies
  ☆172Updated last week
• sdparekh / zUMIs
  zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
  ☆286Updated last year
• Boyle-Lab / Blacklist
  Application for making ENCODE Blacklists
  ☆327Updated 4 years ago
• fl-yu / CUT-RUNTools-2.0
  CUT&RUN and CUT&Tag data processing and analysis
  ☆113Updated 8 months ago
• virajbdeshpande / AmpliconArchitect
  AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …
  ☆155Updated last year
• wheaton5 / souporcell
  Clustering scRNAseq by genotypes
  ☆190Updated last week
• sib-swiss / single-cell-training
  SIB course on single cell transcriptomics by mostly using the Seurat pipeline
  ☆84Updated 3 months ago