Alternatives and similar repositories for Investigating-chromatin-biology-ChIPseq

Users that are interested in Investigating-chromatin-biology-ChIPseq are comparing it to the libraries listed below

• CebolaLab / ATAC-seq
  Analysis pipeline for ATAC-seq data
  ☆83Updated 2 years ago
• harvardinformatics / ATAC-seq
  ☆145Updated 6 years ago
• reskejak / ATAC-seq
  Basic workflow for ATAC-seq analysis
  ☆92Updated last year
• loosolab / TOBIAS
  Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal
  ☆237Updated 3 weeks ago
• crazyhottommy / scATACseq-analysis-notes
  my notes for scATACseq analysis
  ☆132Updated last year
• hbctraining / Intro-to-bulk-RNAseq
  Introduction to bulk RNA-seq
  ☆130Updated 7 months ago
• FredHutch / SEACR
  SEACR: Sparse Enrichment Analysis for CUT&RUN
  ☆120Updated 2 years ago
• CebolaLab / RNA-seq
  Step-by-step analysis pipeline for RNA-seq data
  ☆160Updated 2 years ago
• hbctraining / Intro-to-DGE
  ☆211Updated 4 months ago
• erilu / bulk-rnaseq-analysis
  A complete guide for analyzing bulk RNA-seq data. Go from raw FASTQ files to mapping reads using STAR and differential gene expression an…
  ☆112Updated 5 years ago
• nf-core / atacseq
  ATAC-seq peak-calling and QC analysis pipeline
  ☆220Updated last month
• zhangyuqing / ComBat-seq
  Batch effect adjustment based on negative binomial regression for RNA sequencing count data
  ☆199Updated 5 years ago
• nf-core / cutandrun
  Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …
  ☆105Updated last month
• cortes-ciriano-lab / SComatic
  A tool for detecting somatic variants in single cell data
  ☆215Updated last year
• broadinstitute / ABC-Enhancer-Gene-Prediction
  Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)
  ☆243Updated 6 months ago
• huayc09 / SeuratExtend
  ☆196Updated 3 weeks ago
• fl-yu / CUT-RUNTools-2.0
  CUT&RUN and CUT&Tag data processing and analysis
  ☆113Updated 9 months ago
• PoisonAlien / trackplot
  Generate IGV style locus tracks from bigWig files in R
  ☆175Updated last year
• tavareshugo / tutorial_DESeq2_contrasts
  ☆63Updated last year
• JiekaiLab / scTE
  ☆114Updated last year
• singleron-RD / CeleScope
  Single Cell Analysis Pipelines
  ☆114Updated last week
• sib-swiss / single-cell-training
  SIB course on single cell transcriptomics by mostly using the Seurat pipeline
  ☆84Updated 5 months ago
• bli25 / RSEM_tutorial
  A short tutorial on how to use RSEM
  ☆139Updated 5 years ago
• cellgeni / STARsolo
  wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq
  ☆75Updated 6 months ago
• 10XGenomics / vartrix
  Single-Cell Genotyping Tool
  ☆214Updated 2 years ago
• NBISweden / workshop-scRNAseq
  Single cell RNA sequencing analysis course
  ☆229Updated last month
• tallulandrews / scRNASeqPipeline
  ☆118Updated 7 years ago
• mhammell-laboratory / TEtranscripts
  A package for including transposable elements in differential enrichment analysis of sequencing datasets.
  ☆273Updated last month
• single-cell-genetics / cellsnp-lite
  Efficient genotyping bi-allelic SNPs on single cells
  ☆155Updated 2 months ago
• dviraran / xCell
  Cell types enrichment analysis
  ☆205Updated last year