Alternatives and similar repositories for Investigating-chromatin-biology-ChIPseq:

Users that are interested in Investigating-chromatin-biology-ChIPseq are comparing it to the libraries listed below

• harvardinformatics / ATAC-seq
  ☆127Updated 6 years ago
• loosolab / TOBIAS
  Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal
  ☆209Updated last month
• cortes-ciriano-lab / SComatic
  A tool for detecting somatic variants in single cell data
  ☆193Updated 6 months ago
• crazyhottommy / scATACseq-analysis-notes
  my notes for scATACseq analysis
  ☆122Updated 10 months ago
• FredHutch / SEACR
  SEACR: Sparse Enrichment Analysis for CUT&RUN
  ☆108Updated 2 years ago
• hbctraining / Intro-to-rnaseq-hpc-salmon-flipped
  Introduction to bulk RNA-seq
  ☆104Updated last month
• CebolaLab / RNA-seq
  Step-by-step analysis pipeline for RNA-seq data
  ☆102Updated last year
• nf-core / atacseq
  ATAC-seq peak-calling and QC analysis pipeline
  ☆197Updated last week
• CebolaLab / ATAC-seq
  Analysis pipeline for ATAC-seq data
  ☆48Updated last year
• JiekaiLab / scTE
  ☆105Updated 10 months ago
• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆137Updated 3 years ago
• wheaton5 / souporcell
  Clustering scRNAseq by genotypes
  ☆175Updated 4 months ago
• GreenleafLab / chromVAR
  chromatin Variability Across Regions (of the genome!)
  ☆169Updated 8 months ago
• hbctraining / Intro-to-DGE
  ☆192Updated this week
• nf-core / cutandrun
  Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …
  ☆89Updated last month
• PoisonAlien / trackplot
  Generate IGV style locus tracks from bigWig files in R
  ☆155Updated 4 months ago
• mhammell-laboratory / TEtranscripts
  A package for including transposable elements in differential enrichment analysis of sequencing datasets.
  ☆244Updated last month
• ENCODE-DCC / chip-seq-pipeline
  ENCODE Uniform processing pipeline for ChIP-seq
  ☆123Updated 4 years ago
• Boyle-Lab / Blacklist
  Application for making ENCODE Blacklists
  ☆294Updated 3 years ago
• dviraran / xCell
  Cell types enrichment analysis
  ☆194Updated 9 months ago
• ENCODE-DCC / rna-seq-pipeline
  ☆147Updated 2 years ago
• reskejak / ATAC-seq
  Basic workflow for ATAC-seq analysis
  ☆75Updated last year
• erilu / bulk-rnaseq-analysis
  A complete guide for analyzing bulk RNA-seq data. Go from raw FASTQ files to mapping reads using STAR and differential gene expression an…
  ☆77Updated 4 years ago
• jsh58 / Genrich
  Detecting sites of genomic enrichment
  ☆190Updated last year
• navinlabcode / copykat
  ☆226Updated 8 months ago
• snakemake-workflows / single-cell-rna-seq
  A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.
  ☆101Updated 2 years ago
• BaderLab / CellAnnotationTutorial
  Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
  ☆91Updated 2 years ago
• mdozmorov / scATAC-seq_notes
  scATAC-seq data analysis tools and papers
  ☆104Updated last year
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆184Updated last month
• tallulandrews / scRNASeqPipeline
  ☆118Updated 6 years ago