kundajelab / phantompeakqualtoolsLinks
This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to obtain robust estimates of the predominant fragment length or characteristic tag shift values in these assays.
☆59Updated 5 years ago
Alternatives and similar repositories for phantompeakqualtools
Users that are interested in phantompeakqualtools are comparing it to the libraries listed below
Sorting:
- A toolkit for QC and visualization of ATAC-seq results.☆71Updated 7 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆40Updated 3 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated 9 months ago
- ☆71Updated 2 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 6 years ago
- tools to find circRNAs in RNA-seq data☆44Updated 7 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆82Updated 7 months ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- ☆30Updated 7 years ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆52Updated 3 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆34Updated 6 years ago
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago
- Enhanced version of the FastQTL QTL mapper☆68Updated 2 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- Tutorial Website☆59Updated 4 years ago
- ☆88Updated last month
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated 3 months ago
- R package containing useful functions for mutational signature analysis☆83Updated last week
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆117Updated 6 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools