AQUAS TF and histone ChIP-seq pipeline
☆112Jun 21, 2022Updated 3 years ago
Alternatives and similar repositories for chipseq_pipeline
Users that are interested in chipseq_pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ATAC-seq and DNase-seq processing pipeline☆165Jun 21, 2022Updated 3 years ago
- ENCODE ChIP-seq pipeline☆277Feb 15, 2024Updated 2 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆62Jul 20, 2020Updated 5 years ago
- ChIP-seq analysis notes from Ming Tang☆846Aug 5, 2024Updated last year
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆17Nov 20, 2018Updated 7 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Applying IDR analysis to Homer peaks.☆15May 8, 2020Updated 5 years ago
- ENCODE Uniform processing pipeline for ChIP-seq☆124Mar 23, 2020Updated 6 years ago
- Primer design for ATAC-qPCR☆13Jan 11, 2022Updated 4 years ago
- IDR☆175Sep 18, 2018Updated 7 years ago
- ENCODE DNase-seq pipeline essentials for running on dnanexus.☆12Sep 25, 2019Updated 6 years ago
- chia pet analysis software☆25Jan 17, 2019Updated 7 years ago
- Tools for handling HiC and 5C data☆24Feb 5, 2024Updated 2 years ago
- Quick mining and visualization of NGS data by integrating genomic databases☆269May 5, 2023Updated 2 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆44Jul 6, 2021Updated 4 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- R package to evaluate reproducibility of Hi-C data☆10Mar 16, 2023Updated 3 years ago
- MACS -- Model-based Analysis of ChIP-Seq☆770Mar 19, 2026Updated last week
- Python wrapper around the popular ChIP-Seq peak caller SICER☆15Dec 7, 2017Updated 8 years ago
- Tutorials covering various topics in genomic data analysis.☆16Nov 29, 2018Updated 7 years ago
- ENCODE ATAC-seq pipeline☆449Jul 18, 2024Updated last year
- Snakemake library for bioinformatics programs, with a focus on next-generation sequencing☆22Feb 4, 2016Updated 10 years ago
- A preprocessing and QC pipeline for HiChIP data☆40Jul 11, 2022Updated 3 years ago
- Spectral and reproducibility analysis of Hi-C contact maps☆13Mar 18, 2021Updated 5 years ago
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆18May 25, 2021Updated 4 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data☆34Jul 14, 2017Updated 8 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆22May 25, 2021Updated 4 years ago
- Genomic plot in trellis layout☆43Jan 30, 2026Updated last month
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Nov 21, 2018Updated 7 years ago
- Enriched Domain Detector for ChIP-seq data☆16Aug 17, 2022Updated 3 years ago
- Repository for the code for DeepATAC project presented at WCB workshop in ICML2017☆22Aug 9, 2017Updated 8 years ago
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆109Nov 12, 2025Updated 4 months ago
- Tutorial Website☆65Feb 1, 2021Updated 5 years ago
- nucleosome calling using ATAC-seq☆110Dec 20, 2020Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆47Mar 26, 2025Updated last year
- Analysis and Visualization of Ribosome Profiling Data☆12Dec 14, 2019Updated 6 years ago
- Intro to ChIPseq using HPC☆321Jan 30, 2023Updated 3 years ago
- Q ChIP-seq peak caller☆18Jul 17, 2024Updated last year
- A toolkit to learn how to model and interpret regulatory sequence data using deep learning.☆264Aug 1, 2023Updated 2 years ago
- ☆24Feb 24, 2025Updated last year
- Analysing Capture Seq Count Data☆13Jun 11, 2018Updated 7 years ago