hbctraining / DGE_workshop
☆384Updated 3 years ago
Alternatives and similar repositories for DGE_workshop:
Users that are interested in DGE_workshop are comparing it to the libraries listed below
- Intro to ChIPseq using HPC☆294Updated 2 years ago
- ☆190Updated 2 weeks ago
- Differential expression of RNA-seq data using the Negative Binomial☆370Updated 2 weeks ago
- A repository for setting up a RNAseq workflow☆427Updated 7 years ago
- Collections of library structure and sequence of popular single cell genomic methods☆450Updated 2 months ago
- RNA-seq workflow using STAR and DESeq2☆335Updated 6 months ago
- ☆442Updated 4 years ago
- Bioinformatics one liners from Ming Tang☆462Updated 4 years ago
- This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster☆166Updated 3 years ago
- ENCODE ATAC-seq pipeline☆402Updated 7 months ago
- Materials for short, half-day workshops☆322Updated this week
- Table of software for the analysis of single-cell RNA-seq data.☆313Updated this week
- ChIP-seq analysis notes from Ming Tang☆772Updated 6 months ago
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆487Updated 3 weeks ago
- By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline☆321Updated 6 years ago
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆406Updated last month
- Quick mining and visualization of NGS data by integrating genomic databases☆263Updated last year
- GTEx & TOPMed data production and analysis pipelines☆357Updated 3 weeks ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆393Updated this week
- Application for making ENCODE Blacklists☆288Updated 3 years ago
- GWAS Tutorial for Beginners☆226Updated last month
- Single cell RNA sequencing analysis course☆202Updated 4 months ago
- Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.☆459Updated 3 months ago
- Analysis of single cell RNA-seq data course☆130Updated 2 years ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆263Updated 4 months ago
- 🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.☆162Updated 4 years ago
- MACS -- Model-based Analysis of ChIP-Seq☆720Updated this week
- ENCODE ChIP-seq pipeline☆254Updated last year
- ChIP peak Annotation, Comparison and Visualization☆234Updated 2 weeks ago
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆479Updated 3 weeks ago