yuewangpanda / BioMethylLinks
An R package to interpret biological trends from DNA methylation data
☆18Updated 3 years ago
Alternatives and similar repositories for BioMethyl
Users that are interested in BioMethyl are comparing it to the libraries listed below
Sorting:
- Model-based tumour subclonal deconvolution using population genetics☆33Updated last month
- R package for reading in & working with NucleoATAC outputs☆26Updated 7 years ago
- Flexible Bayesian inference of mutational signatures☆38Updated 2 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 4 years ago
- ☆17Updated last year
- iread☆25Updated 4 years ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Updated 3 years ago
- A small R package to make sequencing read coverage plots in R.☆40Updated 3 weeks ago
- Utility functions for FACETS☆39Updated 2 months ago
- DriverPower☆26Updated last year
- A framework to infer mutational signatures in cancer over time☆56Updated 6 years ago
- Evolutionary frequency visualization tool of temporal data☆23Updated 3 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated 3 months ago
- Filtering of PDX samples for mouse derived reads☆28Updated last week
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆23Updated 2 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- Filter and prioritize fusion calls☆20Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆31Updated last year
- Bead-based single-cell atac processing☆33Updated 4 years ago
- ReMapEnrich is a R-software package to identify significantly enriched regions from ReMap catalogues or user defined catalogues. ReMapEnr…☆15Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- Single-cell Bisulfite Sequencing Data Mapping☆12Updated 4 years ago
- Optimizing Cancer Mutation Signatures Jointly with Sampling Likelihood☆10Updated 3 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated last year
- CNV analysis workflow code for the manuscript☆13Updated 5 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- Ritornello is a high fidelity control free ChIP-seq peak calling algorithm☆13Updated 7 years ago
- Quantifying copy number signatures from absolute copy number profiles☆26Updated 5 months ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week