yuewangpanda / BioMethylLinks
An R package to interpret biological trends from DNA methylation data
☆18Updated 3 years ago
Alternatives and similar repositories for BioMethyl
Users that are interested in BioMethyl are comparing it to the libraries listed below
Sorting:
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 4 years ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Updated 4 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆31Updated last year
- R package for reading in & working with NucleoATAC outputs☆26Updated 7 years ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- Filter and prioritize fusion calls☆20Updated 2 weeks ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆23Updated 9 years ago
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆23Updated 2 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 3 weeks ago
- Evolutionary frequency visualization tool of temporal data☆24Updated 4 years ago
- Model-based tumour subclonal deconvolution using population genetics☆34Updated 2 months ago
- A small R package to make sequencing read coverage plots in R.☆40Updated last month
- Utility functions for FACETS☆39Updated 3 months ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 6 years ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆25Updated 2 weeks ago
- Flexible Bayesian inference of mutational signatures☆41Updated 3 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated 3 months ago
- workshop website on readthedocs☆21Updated 4 months ago
- Ritornello is a high fidelity control free ChIP-seq peak calling algorithm☆13Updated 7 years ago
- Optimizing Cancer Mutation Signatures Jointly with Sampling Likelihood☆10Updated 3 years ago
- Collection of R functions used in the Hochwagen Lab☆12Updated 6 months ago
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆12Updated 4 years ago
- DriverPower☆26Updated last year
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72Updated last year
- Pan-transcriptomic phenotyping☆18Updated 3 months ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆12Updated 7 years ago
- A tidy interface for coverage analysis☆31Updated 5 years ago
- Pairwise Hierarchical Model☆20Updated 3 years ago