R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing
☆63May 9, 2025Updated 11 months ago
Alternatives and similar repositories for dmrseq
Users that are interested in dmrseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Oct 14, 2025Updated 6 months ago
- Devel repository for bsseq☆39Feb 6, 2026Updated 2 months ago
- Tools for working with WGBS data☆14Jul 3, 2017Updated 8 years ago
- R package for DNA methylation analysis☆20Aug 18, 2024Updated last year
- ☆18Apr 9, 2026Updated 3 weeks ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆14May 12, 2023Updated 2 years ago
- DCC/DAC methylation pipeline source☆56Jul 29, 2020Updated 5 years ago
- Python wrapper around the popular ChIP-Seq peak caller SICER☆15Dec 7, 2017Updated 8 years ago
- DensityMap is perl tool for the visualization of features density along chromosomes☆19May 12, 2022Updated 3 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Nov 21, 2018Updated 7 years ago
- A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methyl…☆49Oct 10, 2023Updated 2 years ago
- WALT is a read mapping program for bisulfite sequencing DNA methylation studies.☆17Aug 23, 2022Updated 3 years ago
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆159Aug 8, 2025Updated 8 months ago
- R package for DNA methylation analysis☆253Jan 18, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A local realigner around InDels for MethylSeq data☆12Apr 28, 2016Updated 10 years ago
- Finds DAMEs - Differential Allelicly MEthylated regions☆10Jul 29, 2025Updated 9 months ago
- wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data☆29Jul 31, 2022Updated 3 years ago
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆148May 20, 2023Updated 2 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Oct 8, 2021Updated 4 years ago
- An R for fast and flexible DNA methylation analysis☆36Dec 9, 2025Updated 4 months ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆71Oct 7, 2022Updated 3 years ago
- An information-theoretic pipeline for methylation analysis of WGBS data☆24Apr 9, 2019Updated 7 years ago
- DNA methylation analysis notes from Ming Tang☆93Sep 19, 2019Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A fast and efficient short read mapper☆13Nov 7, 2021Updated 4 years ago
- Reanalysis of the repressive capacity of promoter DNA methylation☆11Feb 14, 2019Updated 7 years ago
- Genomic plot in trellis layout☆43Jan 30, 2026Updated 3 months ago
- ViewBS - a powerful toolkit for visualization of high-throughput bisulfite sequencing data☆87Sep 24, 2024Updated last year
- PAnno is a Pharmacogenomics Annotation tool for clinical genomic testing.☆16Dec 28, 2022Updated 3 years ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆67Dec 22, 2023Updated 2 years ago
- Next generation sequencing (NGS/HTS) tools.☆19Jan 25, 2024Updated 2 years ago
- BISulfite-seq CUI Toolkit☆70Oct 9, 2025Updated 6 months ago
- Interface to 10x Genomics' 1.3 m single cell data set☆19Aug 2, 2018Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A (mostly) universal methylation extractor for BS-seq experiments.☆179Jun 21, 2024Updated last year
- Pipelines in genomics☆23Apr 7, 2022Updated 4 years ago
- This python package is for transitioning bioconductor from SVN to git☆14Mar 15, 2023Updated 3 years ago
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆446Aug 8, 2025Updated 8 months ago
- Cross-platform GUI desktop application for making biological heatmaps☆19Nov 10, 2022Updated 3 years ago
- An interactive Shiny web application for genomic interval enrichment analysis using LOLA.☆16Apr 17, 2022Updated 4 years ago
- bumphunter☆18Mar 19, 2024Updated 2 years ago