kdkorthauer / dmrseq
R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing
☆54Updated 4 months ago
Alternatives and similar repositories for dmrseq:
Users that are interested in dmrseq are comparing it to the libraries listed below
- An R for fast and flexible DNA methylation analysis☆31Updated 6 months ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆49Updated last month
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- Transcript quantification import with automatic metadata detection☆67Updated 2 weeks ago
- Identify and correct invalid gene symbols☆57Updated 2 months ago
- An R interface to the MEME Suite☆47Updated 3 months ago
- Flexible Bayesian inference of mutational signatures☆34Updated 2 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆32Updated 6 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 3 years ago
- A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays☆30Updated last year
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- R package wrapping bedtools☆38Updated 5 months ago
- Glimma R package☆50Updated 4 months ago
- An R Package for Geneset Enrichment Workflows☆76Updated this week
- Interactive R package to quantify, analyse and visualise alternative splicing☆36Updated 3 weeks ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- R package for genomic feature analysis and visualization☆75Updated 4 years ago
- R package containing useful functions for mutational signature analysis☆80Updated this week
- GREAT Analysis - Functional Enrichment on Genomic Regions☆86Updated 5 months ago
- Reactome Pathway Analysis☆40Updated 3 months ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Updated 3 years ago
- Representation and manipulation of genomic intervals☆45Updated 2 months ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 5 months ago
- create, manage, and upload track hubs for use in the UCSC genome browser☆52Updated 9 months ago
- R package for bcbio RNA-seq analysis.☆59Updated 4 months ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated 3 months ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆40Updated 3 years ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆27Updated last month