kdkorthauer / dmrseqLinks
R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing
☆59Updated 3 weeks ago
Alternatives and similar repositories for dmrseq
Users that are interested in dmrseq are comparing it to the libraries listed below
Sorting:
- An R interface to the MEME Suite☆50Updated 8 months ago
- R package for genomic feature analysis and visualization☆78Updated last month
- Glimma R package☆50Updated 9 months ago
- R package for bcbio RNA-seq analysis.☆62Updated 8 months ago
- A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays☆30Updated last year
- An R for fast and flexible DNA methylation analysis☆32Updated 10 months ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆53Updated this week
- Transcript quantification import with automatic metadata detection☆68Updated 3 weeks ago
- BigWig and BAM utilities☆96Updated last year
- Reactome Pathway Analysis☆42Updated last month
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆28Updated 2 months ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 3 years ago
- Moderator Templates for https://www.biostars.org/☆11Updated 4 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆59Updated 4 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆87Updated 2 months ago
- Tutorials covering various topics in genomic data analysis.☆17Updated 6 years ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Updated 3 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆41Updated 7 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- Lightweight Iterative Gene set Enrichment in R☆56Updated 8 months ago
- Identify and correct invalid gene symbols☆58Updated 6 months ago
- Quality of RNA-Seq Toolset☆53Updated 6 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- create, manage, and upload track hubs for use in the UCSC genome browser☆54Updated last year
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- Representation and manipulation of genomic intervals☆46Updated last month
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 6 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago