A light weight shiny based web app to access TCGA data
☆15Apr 29, 2015Updated 10 years ago
Alternatives and similar repositories for web-TCGA
Users that are interested in web-TCGA are comparing it to the libraries listed below
Sorting:
- An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)☆16Jul 3, 2012Updated 13 years ago
- Source code for ScanGEO Shiny App☆15Apr 18, 2022Updated 3 years ago
- An open-source R package for omics data integrative analysis in terms of network, evolution and ontology☆18Jan 4, 2024Updated 2 years ago
- From IDAT to beta.☆25Jul 13, 2018Updated 7 years ago
- Molecular Signatures Database (MSigDB) in a data frame☆16Dec 3, 2018Updated 7 years ago
- 361 Division - Scientific Training, Education and Learning☆28Oct 1, 2020Updated 5 years ago
- 软件方面的包 (包括各种芯片数据处理，NGS数据处理，差异分析等等！)☆14Apr 23, 2016Updated 9 years ago
- Git使用手册☆17Mar 10, 2019Updated 6 years ago
- Pipelines for NGS data preprocessing by the Bock lab and friends☆22Aug 29, 2022Updated 3 years ago
- wgs_pipeline☆18Dec 3, 2013Updated 12 years ago
- ☆20Feb 24, 2017Updated 9 years ago
- An R client for broads firehose pipeline, providing TCGA data sets☆61Jun 25, 2019Updated 6 years ago
- Interactive Differential Expression Analyzer☆37Sep 7, 2020Updated 5 years ago
- Convert BAM files to bigWig files with a simple command☆20Nov 30, 2018Updated 7 years ago
- Virtual Pharmacist is a web tool that interprets personal genome for the impact of genetic variation on drug response. It can take varian…☆13Nov 16, 2015Updated 10 years ago
- Shiny app for visualization, exploration of mouse brain single cell gene expression☆11Oct 31, 2018Updated 7 years ago
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Jul 1, 2020Updated 5 years ago
- Command-line utility to color objects of a KEGG pathway with arbitrary colors☆34Jul 10, 2015Updated 10 years ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Oct 7, 2019Updated 6 years ago
- R implementation of the BAGEL method to call for gene essentiality significance☆11May 1, 2018Updated 7 years ago
- A server for maintaining high-throughput sequencing QC data☆13Aug 5, 2025Updated 7 months ago
- I made a hybrid artist recommender based on user's personality and ratings using collaborative filtering☆14Jul 22, 2017Updated 8 years ago
- Annotation and Prediction of Oncogenic Gene Fusions in RNAseq☆12Feb 20, 2016Updated 10 years ago
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data. Please download the R package from the RaceID3…☆15Dec 7, 2018Updated 7 years ago
- Data science in R notes☆15Apr 28, 2025Updated 10 months ago
- Analysis examples based on the ISB-CGC hosted TCGA data, using R and R Markdown.☆31Nov 27, 2017Updated 8 years ago
- Devel repository for bsseq☆39Feb 6, 2026Updated last month
- ☆62Aug 4, 2020Updated 5 years ago
- Course on good principles & practices in Data Management (https://tinyurl.com/cruk-myrd)☆18May 2, 2023Updated 2 years ago
- ☆19Jun 11, 2025Updated 8 months ago
- synchronize your wordpress or github to hugo website automaticlly☆15Nov 2, 2021Updated 4 years ago
- ☆19Aug 29, 2025Updated 6 months ago
- Scripts to recreate figures from the SC3 paper☆41Mar 1, 2017Updated 9 years ago
- ☆19Jul 6, 2023Updated 2 years ago
- MuSiCa - Mutational Signatures in Cancer☆23Dec 23, 2023Updated 2 years ago
- R package for the inference of cell fate bias from single-cell RNA-seq data.☆22Jun 14, 2022Updated 3 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Jul 6, 2021Updated 4 years ago
- rbioapi: User-Friendly R Interface to Biologic Web Services' API☆24Jan 26, 2026Updated last month
- ☆19Mar 6, 2019Updated 7 years ago