wksofia / wgs_pipeline
wgs_pipeline
☆18Updated 11 years ago
Alternatives and similar repositories for wgs_pipeline:
Users that are interested in wgs_pipeline are comparing it to the libraries listed below
- Scripts involved in our workflow for detecting CNVs from WGS data using read depth-based methods☆46Updated 2 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 8 years ago
- some short but practical PERL script in NGS data analysis☆16Updated 7 years ago
- Documenting usage and experience with bioinformatic tools☆41Updated 9 years ago
- Tutorial for STAR-Fusion, FusionInspector, and de novo reconstruction of fusion transcripts using Trinity☆14Updated 5 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- BIC@MSKCC Variants Pipeline☆24Updated last year
- A simplified pipeline for ctDNA sequencing data analysis☆36Updated 7 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- Filters for false-positive mutation calls in NGS☆30Updated 5 years ago
- 肿瘤突变负荷学习笔记(tumor mutation burden)☆16Updated 5 years ago
- ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data☆25Updated 2 years ago
- HLA typing for Sanger Based Test☆17Updated last year
- R Package for Non Invasive Prenatal Testing (NIPT) analysis☆41Updated 5 years ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- ☆89Updated 4 years ago
- MGI sequence platform data multiplexing tool☆12Updated 5 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 6 years ago
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Updated 5 years ago
- Coding-Non-Coding Index (CNCI)☆39Updated 7 years ago
- 361 Division - Scientific Training, Education and Learning☆28Updated 4 years ago
- identifying mutational significance in cancer genomes☆61Updated 2 years ago
- Fork of the Polysolver project☆31Updated 5 years ago
- ☆23Updated 7 months ago
- Command-line utility to color objects of a KEGG pathway with arbitrary colors☆33Updated 9 years ago
- ☆32Updated 7 years ago
- Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis☆21Updated 2 years ago
- A preprocessing pipeline for ChIP-seq, including alignment, quality control, and visualization.☆27Updated 7 years ago
- ☆41Updated last year
- ☆46Updated 5 years ago