wksofia / wgs_pipeline

Related projects: ⓘ

• bahlolab / bioinfotools
  Documenting usage and experience with bioinformatic tools
  ☆39Updated 9 years ago
• jmzeng1314 / my-perl
  some short but practical PERL script in NGS data analysis
  ☆17Updated 6 years ago
• ben-lerch / IsoSeq-3.0
  ☆25Updated this week
• ShengLi / edmr
  Optimized DMR analysis based on bimodal normal distribution model and cost function for regional methylation analysis.
  ☆16Updated 3 years ago
• sfu-compbio / sinvict
  SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA
  ☆27Updated 3 years ago
• soccin / BIC-variants_pipeline
  BIC@MSKCC Variants Pipeline
  ☆23Updated last year
• ding-lab / MuSiC2
  identifying mutational significance in cancer genomes
  ☆59Updated last year
• OpenGene / ctdna-pipeline
  A simplified pipeline for ctDNA sequencing data analysis
  ☆36Updated 6 years ago
• youngmook / CREST
  ☆18Updated this week
• bioinform / rnacocktail
  ☆87Updated 3 years ago
• pughlab / ConsensusCruncher
  ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…
  ☆21Updated last year
• slzhao / QC3
  QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.
  ☆31Updated 8 years ago
• chrisamiller / readDepth
  R package for inferring copy number from read depth
  ☆30Updated last year
• bjtrost / TCAG-WGS-CNV-workflow
  Scripts involved in our workflow for detecting CNVs from WGS data using read depth-based methods
  ☆44Updated 2 years ago
• xmao / kobas
  KOBAS: a command line tool for identifying significant pathways from genomic data
  ☆30Updated 14 years ago
• gateswell / SplitBarcode
  MGI sequence platform data multiplexing tool
  ☆12Updated 5 years ago
• molgenis / NIPTeR
  R Package for Non Invasive Prenatal Testing (NIPT) analysis
  ☆40Updated 4 years ago
• dnaase / Bis-tools
  A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…
  ☆30Updated 2 years ago
• www-bioinfo-org / CNCI
  Coding-Non-Coding Index (CNCI)
  ☆37Updated 6 years ago
• marvin-jens / find_circ
  tools to find circRNAs in RNA-seq data
  ☆40Updated 6 years ago
• Bioconductor / copy-number-analysis
  Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis
  ☆21Updated last year
• jmzeng1314 / cnv
  ☆32Updated 6 years ago
• Kennedy-Lab-UW / Duplex-Seq-Pipeline
  A standalone end-to-end data analysis pipeline for Duplex Sequencing
  ☆21Updated 10 months ago
• fanyucai1 / TMB
  肿瘤突变负荷学习笔记（tumor mutation burden）
  ☆16Updated 4 years ago
• TomSkelly / MatchAnnot
  Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.
  ☆24Updated 8 years ago
• ctsa / svtools
  Tools for processing and analyzing structural variants.
  ☆32Updated 9 years ago
• girirajanlab / CN_Learn
  CN-Learn
  ☆29Updated 4 years ago
• zhqingit / giremi
  GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.
  ☆42Updated 7 years ago
• stephenfloor / extract-transcript-regions
  For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…
  ☆33Updated last year