fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome
☆159Aug 8, 2025Updated 8 months ago
Alternatives and similar repositories for bwa-meth
Users that are interested in bwa-meth are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A (mostly) universal methylation extractor for BS-seq experiments.☆178Jun 21, 2024Updated last year
- BISulfite-seq CUI Toolkit☆70Oct 9, 2025Updated 6 months ago
- Devel repository for bsseq☆39Feb 6, 2026Updated 2 months ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Mar 28, 2026Updated 3 weeks ago
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆446Aug 8, 2025Updated 8 months ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆187Mar 25, 2026Updated 3 weeks ago
- ☆51Jan 4, 2023Updated 3 years ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆32Jan 28, 2022Updated 4 years ago
- Tools for working with SAM/BAM data☆609Dec 22, 2024Updated last year
- WALT is a read mapping program for bisulfite sequencing DNA methylation studies.☆17Aug 23, 2022Updated 3 years ago
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆63May 9, 2025Updated 11 months ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Jul 6, 2021Updated 4 years ago
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆94Dec 24, 2025Updated 3 months ago
- A versatile aligning pipeline for bisulfite sequencing data☆68Oct 30, 2018Updated 7 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆23Jul 7, 2016Updated 9 years ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆511Feb 26, 2026Updated last month
- ☆13Jun 24, 2019Updated 6 years ago
- R package for DNA methylation analysis☆251Jan 18, 2026Updated 3 months ago
- Updated and optimized fork of BSMAP☆24Dec 28, 2020Updated 5 years ago
- Tools to process and analyze deep sequencing data.☆757Jul 23, 2025Updated 8 months ago
- wgs_pipeline☆18Dec 3, 2013Updated 12 years ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆844Apr 1, 2026Updated 2 weeks ago
- Rcount: simple and flexible RNA-Seq read counting☆12May 19, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Apr 7, 2022Updated 4 years ago
- A flexible framework for rapid genome analysis and interpretation☆319Oct 18, 2022Updated 3 years ago
- Tools for bam file processing☆56Apr 20, 2015Updated 10 years ago
- ☆92Jan 11, 2022Updated 4 years ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆71Oct 7, 2022Updated 3 years ago
- Microassembly based somatic variant caller for NGS data☆154Jun 23, 2022Updated 3 years ago
- Tools for next-generation sequencing analysis☆89Jun 25, 2019Updated 6 years ago
- ☆55Mar 9, 2022Updated 4 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Targeted Amplicon Bisulfite Sequencing Analysis Tool☆11May 8, 2019Updated 6 years ago
- make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.☆200Jan 30, 2026Updated 2 months ago
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆58Mar 29, 2021Updated 5 years ago
- The next version of bwa-mem☆827Oct 15, 2025Updated 6 months ago
- combining p-values using modified stouffer-liptak for spatially correlated results (probes)☆47Mar 18, 2022Updated 4 years ago
- BAM Statistics, Feature Counting and Annotation☆154Apr 12, 2026Updated last week
- Cutadapt removes adapter sequences from sequencing reads☆576Apr 6, 2026Updated 2 weeks ago