YangLab / bamTobwLinks
Convert BAM files to bigWig files with a simple command
☆20Updated 7 years ago
Alternatives and similar repositories for bamTobw
Users that are interested in bamTobw are comparing it to the libraries listed below
Sorting:
- ☆39Updated 4 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- Keep Me Around: Intron Retention Detection☆30Updated 7 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- chimeraviz is an R package that automates the creation of chimeric RNA visualizations.☆39Updated 2 years ago
- Flexible Bayesian inference of mutational signatures☆38Updated 3 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- ☆33Updated 3 years ago
- A set of tools to annotate VCF files with expression and readcount data☆30Updated 10 months ago
- Mapped QC analysis program☆43Updated 7 years ago
- ☆26Updated last year
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆32Updated 4 years ago
- Long read to rMATS☆32Updated 2 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 8 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- IDR☆30Updated 2 years ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 4 years ago
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆28Updated 7 months ago
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 8 years ago
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆34Updated 9 months ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆30Updated 4 years ago
- RNA-seq workflow: differential transcript usage☆23Updated 2 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆49Updated 3 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆56Updated 3 months ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- R package for DNA methylation analysis☆20Updated last year
- Automated human exome/genome variants detection from FASTQ files☆23Updated 4 years ago