YangLab / bamTobw
Convert BAM files to bigWig files with a simple command
☆20Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for bamTobw
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆39Updated 3 years ago
- Genomic Association Tester☆29Updated last year
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆27Updated 3 years ago
- RNA-seq workflow: differential transcript usage☆20Updated last year
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆36Updated 2 years ago
- IDR☆30Updated last year
- Keep Me Around: Intron Retention Detection☆29Updated 5 years ago
- a set of NGS pipelines☆24Updated 3 weeks ago
- chia pet analysis software☆25Updated 5 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆31Updated 6 years ago
- Detecting intron retention from RNA-Seq experiments☆53Updated 4 months ago
- SingleCell Nanopore sequencing data analysis☆52Updated last month
- Splice junction analysis and filtering from BAM files☆39Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆41Updated 2 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆26Updated 5 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- Tool for RNA-Seq analysis.☆38Updated 2 years ago
- GTEx analysis scripts☆20Updated 7 years ago
- SEASTAR - Systematic Evaluation of Alternative transcription STArt site in RNA☆13Updated 6 years ago
- A preprocessing pipeline for ChIP-seq, including alignment, quality control, and visualization.☆27Updated 7 years ago
- Integrated copy number variation detection toolset☆25Updated 4 years ago
- Snakemake pipeline for running MAJIQ☆19Updated 11 months ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 5 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 5 years ago
- An R package for Splice-aware quantification of translation using Ribo-seq data☆17Updated 11 months ago
- RPKM for RNASeq counts☆16Updated 4 years ago
- Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis☆21Updated last year
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Updated 2 years ago