smithlabcode / waltLinks
WALT is a read mapping program for bisulfite sequencing DNA methylation studies.
☆17Updated 2 years ago
Alternatives and similar repositories for walt
Users that are interested in walt are comparing it to the libraries listed below
Sorting:
- Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.☆16Updated 11 years ago
- ☆12Updated 5 years ago
- A program for summarising CpG methylation patterns☆20Updated 8 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆16Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Updated 3 years ago
- Multi-sample cancer phylogeny reconstruction☆35Updated 7 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- COMETgazer mehylation analysis software suite☆10Updated 5 years ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 4 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- MUltiScale enrIchment Calling for ChIP-Seq Datasets☆23Updated 6 years ago
- A tool for Read Multi-Mapper Resolution☆23Updated 8 years ago
- ☆22Updated 5 months ago
- DriverPower☆26Updated 6 months ago
- ☆21Updated last year
- Filters for false-positive mutation calls in NGS☆31Updated 6 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- Correctly counting molecules using unique molecular identifiers (UMIs)☆9Updated 3 years ago
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆17Updated 6 months ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- A curated list of awesome clonality and tumor heterogeneity resources☆15Updated 6 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Haplotype-based somatic genome simulator☆10Updated 8 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 11 months ago
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆27Updated 3 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- Tools to process LIANTI sequence data☆23Updated 6 years ago