daler / metaseqLinks
Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data
☆87Updated 5 years ago
Alternatives and similar repositories for metaseq
Users that are interested in metaseq are comparing it to the libraries listed below
Sorting:
- RNA-Sequencing data differential expression analysis pipeline. Performs: genome coverage (via bedtools and HTSeq), generates Circos code …☆56Updated 13 years ago
- Application for inferring subclonal composition and evolution from whole-genome sequencing data.☆113Updated 3 years ago
- R package for bcbio RNA-seq analysis.☆63Updated last year
- Decrypting somatic mutation patterns to reveal the evolution of cancer☆56Updated 4 years ago
- Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps☆124Updated 7 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 8 years ago
- Quality of RNA-Seq Toolset☆53Updated 6 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Battenberg algorithm and associated implementation script☆53Updated 5 years ago
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.☆70Updated 4 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- Transcript quantification import for modular pipelines☆143Updated 3 months ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆100Updated 4 years ago
- Identifying recurrent mutations in cancer☆39Updated 4 years ago
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆50Updated last year
- An R package for inferring the subclonal architecture of tumors☆121Updated 2 years ago
- ☆35Updated 9 years ago
- nucleosome calling using ATAC-seq☆109Updated 5 years ago
- GTEx Visualizations☆66Updated 4 years ago
- Mutational signature analysis for low statistics SNV data☆64Updated last year
- Exon-exon splice junctions across SRA☆43Updated 4 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Characterization of Germline variants☆99Updated 3 years ago
- identifying mutational significance in cancer genomes☆62Updated 3 years ago
- Analysis pipeline for cancer sequencing data☆112Updated 8 months ago
- ☆73Updated 2 years ago
- A preprocessing and QC pipeline for HiChIP data☆40Updated 3 years ago