daler / metaseqLinks
Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data
☆87Updated 4 years ago
Alternatives and similar repositories for metaseq
Users that are interested in metaseq are comparing it to the libraries listed below
Sorting:
- Decrypting somatic mutation patterns to reveal the evolution of cancer☆56Updated 4 years ago
- RNA-Sequencing data differential expression analysis pipeline. Performs: genome coverage (via bedtools and HTSeq), generates Circos code …☆55Updated 12 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 7 years ago
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.☆69Updated 3 years ago
- Battenberg algorithm and associated implementation script☆53Updated 4 years ago
- identifying mutational significance in cancer genomes☆61Updated 2 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- ☆69Updated 3 years ago
- Application for inferring subclonal composition and evolution from whole-genome sequencing data.☆111Updated 2 years ago
- Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps☆124Updated 6 years ago
- R package for bcbio RNA-seq analysis.☆62Updated 11 months ago
- Identifying recurrent mutations in cancer☆37Updated 4 years ago
- ChIP-seq DC and QC Pipeline☆35Updated 4 years ago
- Analysis pipeline for cancer sequencing data☆110Updated 3 months ago
- Collection of CGAT NGS Pipelines☆43Updated 6 years ago
- Quality of RNA-Seq Toolset☆53Updated 6 years ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆97Updated 2 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Transcript quantification import for modular pipelines☆141Updated last month
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆49Updated last year
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- Mutational signature analysis for low statistics SNV data☆64Updated last year
- ☆70Updated 2 years ago
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆61Updated 6 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- Scripts, utilities and programs for genomic bioinformatics.☆83Updated last month
- Cloud-based single-cell copy-number variation analysis tool☆51Updated 2 years ago