waterlandlab / CluBCpGLinks
Cluster-based analysis of CpG methylation
☆13Updated last year
Alternatives and similar repositories for CluBCpG
Users that are interested in CluBCpG are comparing it to the libraries listed below
Sorting:
- Human and mouse genome assemblies customized for rDNA mapping☆11Updated 9 months ago
- Suite of tools to conduct methylation data analysis. Methods from this workspace can be used for alignment and quality control analysis f…☆20Updated 5 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 3 years ago
- An introduction to various methods/approaches for the analysis of peaks generated from ChIP-seq / CUT&RUN / ATAC-seq☆38Updated 3 months ago
- An R package to time somatic mutations☆65Updated 5 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆35Updated 3 years ago
- Merge fastq files split over lanes☆20Updated 7 years ago
- ☆41Updated 3 years ago
- A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.☆28Updated 2 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- R package wrapping bedtools☆44Updated 8 months ago
- An R for fast and flexible DNA methylation analysis☆35Updated this week
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 4 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆34Updated 7 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆31Updated 2 years ago
- ☆41Updated 7 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆45Updated 2 years ago
- ☆38Updated 4 years ago
- ☆48Updated 11 months ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Tutorial Website☆60Updated 4 years ago
- Python package with CLI for the analysis of single cell methylation data.☆18Updated last year
- SigProfilerPlotting provides a standard tool for displaying all types of mutational signatures as well as all types of mutational pattern…☆51Updated last month
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72Updated last year
- An R interface to the MEME Suite☆53Updated 6 months ago
- R package with motifs for use with chromVAR☆28Updated 8 years ago