☆36Feb 19, 2025Updated last year
Alternatives and similar repositories for STAGES
Users that are interested in STAGES are comparing it to the libraries listed below
Sorting:
- R tool to analyse and integrate multiple -omics data☆15Jan 4, 2026Updated 2 months ago
- Predict genic elements as splice sites, exons or genes, along eukaryotic DNA sequences☆18Jan 19, 2023Updated 3 years ago
- ☆13May 27, 2025Updated 9 months ago
- Visualize sequence and multiple sequence alignment (MSA)☆15May 30, 2022Updated 3 years ago
- rnalib: a python-based transcriptomics library☆11Jan 23, 2026Updated last month
- R functions underlying ExpressAnalyst☆13Feb 7, 2026Updated 3 weeks ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Aug 3, 2023Updated 2 years ago
- A couple of tools I find indispensable for post orthomcl down-stream analysis.☆11Oct 2, 2019Updated 6 years ago
- methylR: a single shiny solution from sequencer data to pathway analysis☆12Oct 30, 2024Updated last year
- An R package for extracting mutational signatures from vcf files☆11Feb 13, 2025Updated last year
- Methylatino phasing using PacBio CCS reads☆14Dec 13, 2024Updated last year
- ☆13Dec 5, 2024Updated last year
- Homologizer: phasing gene copies into polyploid subgenomes☆11Feb 3, 2026Updated last month
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Oct 15, 2025Updated 4 months ago
- ☆27Jun 5, 2025Updated 9 months ago
- De Novo Drug Design by Iterative Multi-Objective Deep Reinforcement Learning with graph-based Molecular Quality Assessment☆14Mar 20, 2023Updated 2 years ago
- qpx (Quantitative Proteomics eXchange) format (aka quantms.io) a format to capture a full proteomics experiment☆15Updated this week
- Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).☆16Jan 20, 2026Updated last month
- xOmicsShiny: an R Shiny application for cross-omics data analysis and pathway mapping, Bioinformatics Advances, Volume 5, Issue 1, 2025, …☆38Feb 6, 2026Updated last month
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 3 years ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆31Aug 9, 2023Updated 2 years ago
- Multi-Species Codon Optimization Engine☆27Jul 16, 2025Updated 7 months ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Apr 10, 2024Updated last year
- ProXL Web App -- Visualize and Share Protein Cross-linking Data☆13Feb 23, 2026Updated last week
- A collection of easy-to-use custom ggplot2-based functions for data exploration and analysis. Each function handles data preprocessing an…☆24Dec 23, 2025Updated 2 months ago
- A server for maintaining high-throughput sequencing QC data☆13Aug 5, 2025Updated 7 months ago
- ☆12Jan 21, 2016Updated 10 years ago
- Gene copy number prediction from k-mer frequencies☆15Jul 29, 2024Updated last year
- ORF prediction using python☆12Aug 24, 2021Updated 4 years ago
- ☆42Nov 29, 2025Updated 3 months ago
- Codebase for BioPathNet to predict links in biomedical knowledge graphs☆29Feb 19, 2026Updated 2 weeks ago
- ☆16May 7, 2023Updated 2 years ago
- Generate Dose-Response Curves in Python☆13Jan 26, 2026Updated last month
- ☆13Sep 8, 2021Updated 4 years ago
- TCSC (Tissue co-regulation score regression) is a statistical genetics method to identify causal tissues in diseases and complex traits.☆15Oct 3, 2024Updated last year
- ☆17Feb 16, 2024Updated 2 years ago
- ☆15Sep 26, 2025Updated 5 months ago
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Mar 13, 2019Updated 6 years ago
- https://grasp.ufv.br/☆15Jul 6, 2023Updated 2 years ago